Overlooked virus “generated a mess,” infected highly cited Cell, PNAS papers

When Alexander Harms arrived at the University of Copenhagen in August 2016, as a postdoc planning to study a type of antibiotic resistance in bacteria, he carried with him a warning from another lab who had recruited him:

People said, “If you go there, you have to deal with these weird articles that nobody believes.”

The papers in question had been published in the Proceedings of the National Academy of Sciences in 2011 and Cell in 2013. Led by Kenn Gerdes, Harms’s new lab director, the work laid out a complex chain of events that mapped out how an E. coli bacterium can go into a dormant state, called persistence, that allows it to survive while the rest of its colony is wiped out.

Despite some experts’ skepticism, each paper had been cited hundreds of times. And Harms told us:

I personally did believe in the published work. There had been papers from others that kind of attacked [the Gerdes lab’s theory], but that was not high-quality work.

But by November 2016, Harms figured out that the skeptics had been right.  Continue reading Overlooked virus “generated a mess,” infected highly cited Cell, PNAS papers

Caught Our Notice: Should publicly funded research tools be free for researchers to use?

Title: Adherence to Adjuvant Neuropathic Pain Medications in a Palliative Care Clinic

What Caught Our Attention: We’ve found a fourth retraction for the unlicensed use of a common research tool, an issue we explored in depth for Science last year. Quick recap: When researchers use a copyrighted questionnaire (MMAS-8) without permission, they get a call from its creator Donald Morisky (or his representative), asking them to pay up — sometimes thousands of dollars. There’s another option: Retract the paper. That was the choice made by a group of researchers in Arkansas, who — in a nicely detailed notice — note that, since the scale was developed using federal funds, “they dispute the validity and reasonableness of Dr. Morisky’s demands in light of the National Institutes of Health’s Principles and Guidelines for Recipients of NIH Research Grants and Contracts on Obtaining and Disseminating Biomedical Research Resources.” Continue reading Caught Our Notice: Should publicly funded research tools be free for researchers to use?

Florida investigation can’t ID culprit who falsified data in retracted PNAS paper

When the Proceedings of the National Academy of Sciences retracted a gene therapy paper in December, it declared that some of the data had been falsified and mentioned a research misconduct investigation. But the notice said nothing about who was responsible.

Via a public records request, Retraction Watch has obtained investigation documents from the University of Florida, which show the focus had been narrowed down to two of the paper’s three co-first authors. But the investigation committee didn’t assign blame to either one. According to their final report, dated Oct. 24, 2016:

there was not enough direct evidence to either implicate or exonerate either of these individuals.

Over the course of the formal investigation, which lasted from early August to late October 2016,  the committee was able to determine that data in the PNAS paper had been falsified. However, it said: Continue reading Florida investigation can’t ID culprit who falsified data in retracted PNAS paper

Caught Our Notice: Big journal, big correction

Title: Tranexamic Acid in Patients Undergoing Coronary-Artery Surgery

What Caught Our Attention: When the New England Journal of Medicine (NEJM) publishes a correction that is more than a misspelling of a name, we take a look. When NEJM publishes a 500-word correction to the data in a highly cited article, we take notice. This study tested the effects of a drug to prevent blood loss in patients undergoing heart surgery; it’s been the subject of correspondence between the authors and outside experts. The correction involved tweaks — lots of tweaks — to the text and tables, which did not change the outcomes.   Continue reading Caught Our Notice: Big journal, big correction

BMJ journal pulls case report after UK tabloids publish graphic photos

A BMJ journal has retracted a medical case report about a couple in the United Kingdom who were infected by parasitic worms while on a Caribbean cruise.

The paper in BMJ Case Reports included graphic photos of the patients’ buttocks, the site of the infection, which were republished within a week by UK tabloids.

Specifics about when and why the journal retracted the paper remains unclear. BMJ Publishing Group, the journal, and the corresponding author have not responded to multiple requests for comment.

A UK-based lawyer, who has represented doctors in cases that touch on publishing and media law, told us there could be legal trouble. Martin Soames, of London firm Simons Muirhead & Burton, told Retraction Watch that UK laws governing patient confidentiality or protection of personal information could apply, raising problems for both the publisher and the doctors who wrote the paper. [See update at the end of the post, in which the editor says the paper was removed, and “does not consider that there are any issues of liability.”]  Continue reading BMJ journal pulls case report after UK tabloids publish graphic photos

Should a journal retract a paper the authors didn’t know contained bad data?

A medical journal has retracted a 2016 paper over a series of errors, prompting it to lose faith in the paper overall. The authors have objected to the decision, arguing the errors weren’t their fault and could be revised with a correction — rather than retracting what they consider “an important contribution” to an ongoing debate in medicine.

The paper explored the so-called weekend effect—that patients admitted to the emergency department on the weekend are more likely to die than those admitted on a weekday. Whether the weekend effect is real is not clear. Some studies have supported the phenomenon in certain areas of medicine, but others (including the now-retracted paper) have failed to find an effect.

First author Mohammed A. Mohammed, based at the University of Bradford in the UK, told Retraction Watch that the errors were introduced by one of the hospitals that provided them the data:

Continue reading Should a journal retract a paper the authors didn’t know contained bad data?

Caught Our Notice: Brian Wansink issues correction that’s longer than original paper

Title: Attractive names sustain increased vegetable intake in schools

What Caught Our Attention: One thing can be said for the corrections for Brian Wansink‘s papers — they aren’t short.  After James Heathers outlined some of his concerns about the highly cited study back in March, 2017, the journal has issued a correction, and it’s longer (1636 words) than the original, highly cited paper (1401 words). Some of the changes include explaining the children studied were preschoolers (3-5 years old), not preteens (8-11), as originally claimed. (It may be hard to imagine how the authors could make such a mistake, but they did it once before, in another retracted paper.) Even with all those words explaining the correction — we’re only including an excerpt of the entire notice below — some concerns still remain: Continue reading Caught Our Notice: Brian Wansink issues correction that’s longer than original paper

Study that said hate cuts 12 years off gay lives fails to replicate

A highly cited paper has received a major correction as a result of the ongoing battle over attitudes towards gay people, when a prominent — and polarizing — critic showed it could not be replicated.  

In December 2017, researchers led by Mark Hatzenbuehler of Columbia University corrected the paper, originally published in Social Science & Medicine in February 2014, which showed that gay people who live in areas where people were highly prejudiced against them had a significantly shorter life expectancy. The corrigendum came more than a year after a researcher who has testified against same-sex marriage was unable to replicate the original study.

“Structural stigma and all-cause mortality in sexual minority populations,” has been cited 102 times, according to Clarivate Analytics’ Web of Science, and attracted media coverage when it was published, from outlets such as Reuters and U.S. News & World Report.

Continue reading Study that said hate cuts 12 years off gay lives fails to replicate

Macchiarini, 3 co-authors found guilty of misconduct in 2015 paper

The Karolinska Institutet in Sweden has declared that once-lauded surgeon Paolo Macchiarini and three co-authors committed misconduct in a 2015 paper.

The decision by KI’s vice chancellor will be followed by a request to retract the paper, published by the journal Respiration.

In the paper, the researchers described the case of a man with an acute lung disorder, in which he received an experimental treatment involving the use of his own blood-derived cells and the drug erythropoietin, which stimulates the production of red blood cells. The patient “demonstrated an immediate, albeit temporary, clinical improvement,” according to the authors. However, he ultimately died of multisystem organ failure.

Continue reading Macchiarini, 3 co-authors found guilty of misconduct in 2015 paper

For the second time, researchers retract — then republish — a vaccine paper

Photo credit: Blake Patterson

Two researchers with a troubled publication history about vaccine safety have withdrawn their third paper.

Along with several other co-authors, Christopher Shaw, of the University of British Columbia, and Lucija Tomljenovic, of the Neural Dynamics Research Group, recently withdrew a 2017 paper about a controversy over a tetanus vaccination program in Kenya.  

The paper has been republished in the same journal, adding another chapter to Shaw and Tomljenovic’s confusing record of publishing and withdrawing papers. The journal did not respond to our request for comment, but Shaw told Retraction Watch:

Continue reading For the second time, researchers retract — then republish — a vaccine paper