Lawsuit involving PubPeer unmasks commenter as pseudonymous whistleblower Clare Francis

pubpeerAn attorney for Fazlul Sarkar, the Wayne State University researcher who claims he lost a job offer because of comments about his research on PubPeer, has asked a judge to reconsider last month’s decision not to release information about the site’s anonymous commenters. As a consequence, the brief in support of that motion identifies a key commenter as the pseudonymous Clare Francis.

On March 19, a Michigan court ruled that PubPeer had to disclose identifying information about a single commenter, who left the second of these comments: Continue reading Lawsuit involving PubPeer unmasks commenter as pseudonymous whistleblower Clare Francis

Two more retractions bring lab break-in biochemist up to eleven

bbrcKarel Bezouška, the Czech biochemist who was caught on hidden camera breaking into a lab fridge to fake results, has turned it up to eleven with two new retractions.

Both retractions appeared in Biochemical and Biophysical Research Communications, one in October 2014 and one in January 2015.  His story began two decades ago in 1994, when he published a paper in Nature that couldn’t be reproduced, and was eventually retracted in 2013.

The best part of the story, of course, is that when his university was attempting to recreate his experiments, Bezouška broke into a lab fridge to tamper with the experiments. Unbeknownst to him, he was caught on hidden camera.  Continue reading Two more retractions bring lab break-in biochemist up to eleven

Poll: What to do when peer review feels inadequate?

Imagine via Raul Pacheco-Vega
Image via Raul Pacheco-Vega

How should scientists think about papers that have undergone what appears to be a cursory peer review? Perhaps the papers were reviewed in a day — or less — or simply green-lighted by an editor, without an outside look. That’s a question Dorothy Bishop, an Oxford University autism researcher, asked herself when she noticed some troubling trends in four autism journals.

Recently, Bishop sparked a firestorm when she wrote several blog posts arguing that these four autism journals had a serious problem. For instance, she found that Johnny Matson, then-editor of Research in Developmental Disabilities and Research in Autism Spectrum Disorders, had an unusually high rate of citing his own research – 55% of his citations are to his own papers, according to Bishop. Matson also published a lot in his own journals – 10% of the papers published in Research in Autism Spectrum Disorders since Matson took over in 2007 have been his. Matson’s prodigious self-citation in Research in Autism Spectrum Disorders was initially pointed out by autism researcher Michelle Dawson, as noted in Bishop’s original post.

Short peer reviews of a day or less were also common. Matson no longer edits the journals, both published by Elsevier.

Bishop noted similar findings at Developmental Neurorehabilitation and Journal of Developmental and Physical Disabilities, where the editors (and Matson) frequently published in each others’ journals, and they often had short peer reviews: The median time for Matson’s papers in Developmental Neurorehabilitation between 2010 and 2014 was a day, and many were accepted the day they were submitted, says Bishop.

Although this behavior may seem suspect, it wasn’t necessarily against the journals’ editorial policies. This is the peer review policy at RIDD:

Continue reading Poll: What to do when peer review feels inadequate?

Retraction to appear for beleaguered plant researcher Olivier Voinnet

Olivier Voinnet
Olivier Voinnet

Olivier Voinnet, a researcher at ETH in Zurich who has corrected a number of his papers following critiques on PubPeer dating from late last year, is retracting a 2004 paper in The Plant Cell, according to the journal’s publisher.

Voinnet, the winner of the 2013 Rössler Prize, is a high-profile scientist, and scrutiny of his work has only grown since the initial revelations. In an unusual move, the journal and its publisher, the American Society of Plant Biologists, put out a press release about the situation today. Here’s the statement: Continue reading Retraction to appear for beleaguered plant researcher Olivier Voinnet

Cancer researcher under investigation in Italy notches eighth retraction

ejcancerAlfredo Fusco, the researcher in Italy who is under criminal investigation and has had seven papers retracted, has lost yet another study.

The investigation, which came to light in late 2013, had focused on eight papers thought to demonstrate evidence of image manipulation.

The latest paper, in the European Journal of Cancer, studied mice with a genetic alteration associated with lipomas (benign fatty growths) in humans.

Here’s part of the notice for “Expression of a truncated Hmga1b gene induces gigantism, lipomatosis and B-cell lymphomas in mice”: Continue reading Cancer researcher under investigation in Italy notches eighth retraction

Other shoe drops for MIT cancer researcher Robert Weinberg as Cell retraction appears

cell cloningRobert Weinberg, a prominent cancer scientist whose papers often notch hundreds or thousands of citations, has lost a fourth paper, this time a 2009 publication in Cell.

Journal Genes and Development pulled two of Weinberg’s papers in March, stating that they had retracted the 2009 study because data from several experiments was used in figures that seemed to represent only one. The Genes and Development papers were sunk because the “same analytical methodology was used.”

At the time, the Cell retraction was unavailable, though a spokesperson informed us it was forthcoming. The paper has been cited 482 times, according to Thomson Scientific’s Web of Knowledge.

Now that the notice has landed, here’s why the paper is being retracted: Continue reading Other shoe drops for MIT cancer researcher Robert Weinberg as Cell retraction appears

“Not faithful” figures kill apoptosis paper

iaicoverA paper on apoptosis in mice has been retracted by Infection and Immunity after a reader tipped them off that several figures were “not faithful representations of the original data.”

When the journal, published by the American Society for Microbiology (ASM), contacted the authors at Anhui Medical University in Hefei, China, they claimed they couldn’t provide the experimental data thanks to “damage to a personal computer,” said Ferric Fang, editor of the journal and a member of the board of directors of the Center for Scientific Integrity, Retraction Watch’s parent organization. Seven figures in total were compromised, including several that were duplicated throughout the article.

Here’s the notice for “Reactive Oxygen Species-Triggered Trophoblast Apoptosis Is Initiated by Endoplasmic Reticulum Stress via Activation of Caspase-12, CHOP, and the JNK Pathway in Toxoplasma gondii Infection in Mice”: Continue reading “Not faithful” figures kill apoptosis paper

University finds Dutch economist guilty of misconduct; he responds

Peter Nijkamp

The Free University of Amsterdam found Peter Nijkamp, one of the nation’s leading economists who has lost several papers for self-plagiarism, has been found guilty of “questionable research practices,” according to the newly released results of an investigation.

Nijkamp has published a strongly worded criticism of the report (at least according to Google Translate, since his writing is in Dutch).

According to independent student publication Ad Valvas, the commission, led by Jaap Zwemmer, a professor emeritus at the University of Amsterdam, found Nijkamp was guilty of “questionable research practices.” University rector Frank van der Duyn Schouten, on the other hand, said in an official statement that there was “insufficient basis” to claim questionable research practices for each article.

Continue reading University finds Dutch economist guilty of misconduct; he responds

Judge tells PubPeer to hand over information about anonymous commenter; site weighing “options”

pubpeerA Michigan judge has ruled against a motion by PubPeer to protect the identity of an anonymous commenter, and asked the post-publication peer review site to give her any information they have about the commenter.

According to one of the lawyers present, the site said in court the only identifying information it has is an I.P. address. The judge will decide March 24 (Tuesday) whether or not to share the I.P. address with the lawyer representing a cancer researcher who has demanded PubPeer release information about those who have written anonymously about his work.

On March 5, PubPeer had a better day in court, when the judge agreed to allow the site to protect the identities of its other anonymous commenters. For the remaining commenter, the judge asked to hold another hearing yesterday.

During that meeting, the judge ordered PubPeer to produce “identifying information for that commenter,” said Alexander Abdo of the American Civil Liberties Union, who helped represent PubPeer in this case: Continue reading Judge tells PubPeer to hand over information about anonymous commenter; site weighing “options”

Two more retractions appear for prominent MIT cancer researcher Robert Weinberg

genes and developmentTwo identical retraction notices have popped up for MIT professor Robert Weinberg, a highly-cited cancer researcher who had a retraction and a correction in 2013, both in Cancer Cell. 

These two new retractions, in Genes and Development, stem directly from another paper by Weinberg and colleagues in Cell that will apparently be retracted, as the “same analytical methodology was used,” according to the notices [see bottom of the post for an update].

Weinberg is highly regarded, and at least 20 of his papers have been cited over a thousand times.

First author Scott Valastyan was a promising postdoc at the time of the paper’s publication. He was a 2011 Runyon Fellow at Harvard, a three-year, $156,000 award for outstanding cancer postdocs. He doesn’t seem to have published anything since 2012, though he is listed as a joint inventor with Weinberg on patents filed in 2009 and 2014.

Here are the notices for “Concomitant suppression of three target genes can explain the impact of a microRNA on metastasis” (cited 73 times, according to Thomson Scientific’s Web of Knowledge) and “Activation of miR-31 function in already-established metastases elicits metastatic regression” (cited 54 times), both paywalled: Continue reading Two more retractions appear for prominent MIT cancer researcher Robert Weinberg