Stats error has chilling effect on global warming paper

global change biologyIt turns out a 2014 paper that found a surprising pattern of plant migration in response to global warming was not so surprising after all — it’s been retracted by the authors due to a mistake in the statistical analysis.

Most studies on migrating populations have found that species around the globe move north to escape the rising temperatures. But the authors of the 2014 paper in Global Change Biology found the opposite — according to their analysis, many plant species in Western North America had been migrating south, toward warmer climates.

The lead author Melanie Harsch told Science in 2014 that the team had been suspicious of the analysis, and so ran it twice: Continue reading Stats error has chilling effect on global warming paper

Poll: What to do when peer review feels inadequate?

Imagine via Raul Pacheco-Vega
Image via Raul Pacheco-Vega

How should scientists think about papers that have undergone what appears to be a cursory peer review? Perhaps the papers were reviewed in a day — or less — or simply green-lighted by an editor, without an outside look. That’s a question Dorothy Bishop, an Oxford University autism researcher, asked herself when she noticed some troubling trends in four autism journals.

Recently, Bishop sparked a firestorm when she wrote several blog posts arguing that these four autism journals had a serious problem. For instance, she found that Johnny Matson, then-editor of Research in Developmental Disabilities and Research in Autism Spectrum Disorders, had an unusually high rate of citing his own research – 55% of his citations are to his own papers, according to Bishop. Matson also published a lot in his own journals – 10% of the papers published in Research in Autism Spectrum Disorders since Matson took over in 2007 have been his. Matson’s prodigious self-citation in Research in Autism Spectrum Disorders was initially pointed out by autism researcher Michelle Dawson, as noted in Bishop’s original post.

Short peer reviews of a day or less were also common. Matson no longer edits the journals, both published by Elsevier.

Bishop noted similar findings at Developmental Neurorehabilitation and Journal of Developmental and Physical Disabilities, where the editors (and Matson) frequently published in each others’ journals, and they often had short peer reviews: The median time for Matson’s papers in Developmental Neurorehabilitation between 2010 and 2014 was a day, and many were accepted the day they were submitted, says Bishop.

Although this behavior may seem suspect, it wasn’t necessarily against the journals’ editorial policies. This is the peer review policy at RIDD:

Continue reading Poll: What to do when peer review feels inadequate?

Wayne State neuroscientist fudged images in five papers

Teresita L. Briones
Teresita L. Briones

Teresita Briones, a former nursing professor at Wayne State University in Detroit who studied neuroscience, manipulated images in five papers, according to the Office of Research Integrity.

Briones, who focused on neuroplasticity: Continue reading Wayne State neuroscientist fudged images in five papers

Rolling Stone retracts UVA gang rape story: A view from Retraction Watch

Rolling-Stone-LOGO-2Rolling Stone has officially retracted its blockbuster story on a gruesome gang rape at the University of Virginia, “A Rape on Campus.”

The story, which followed the case of a UVA student named Jackie, was retracted last night after a 12,700-word report was released by the Columbia Journalism School and published on Rolling Stone’s website. The CJR review uncovered a breakdown in very basic reporting principles, including pressing hard for outside confirmation of difficult stories and sending “no surprises” letters to every person being portrayed in an unflattering light. The report was accompanied by an apology from managing editor Will Dana, who penned the editor’s note we discussed in December. The writer, Sabrina Rubin Erdely, also released a statement, which read in part: Continue reading Rolling Stone retracts UVA gang rape story: A view from Retraction Watch

Second paper for Duke lung researchers expires in a retraction

pnas 3 5 13Scientists at Duke and the National Institutes of Health have retracted a PNAS paper on asthma treatment after realizing the data from two sources didn’t match, and “most primary data” from several experiments were missing.

The mix up seems to have come from the pulmonary function laboratory that tested how well asthmatic patients’ lungs were functioning on an experimental anti-inflammatory therapy. As the authors say in the retraction note: Continue reading Second paper for Duke lung researchers expires in a retraction

Other shoe drops for MIT cancer researcher Robert Weinberg as Cell retraction appears

cell cloningRobert Weinberg, a prominent cancer scientist whose papers often notch hundreds or thousands of citations, has lost a fourth paper, this time a 2009 publication in Cell.

Journal Genes and Development pulled two of Weinberg’s papers in March, stating that they had retracted the 2009 study because data from several experiments was used in figures that seemed to represent only one. The Genes and Development papers were sunk because the “same analytical methodology was used.”

At the time, the Cell retraction was unavailable, though a spokesperson informed us it was forthcoming. The paper has been cited 482 times, according to Thomson Scientific’s Web of Knowledge.

Now that the notice has landed, here’s why the paper is being retracted: Continue reading Other shoe drops for MIT cancer researcher Robert Weinberg as Cell retraction appears

Concurrent submission and publication squashes nano paper

CoverIssueJExptNanoSciA group of materials researchers at Solapur University in India have lost a paper because they submitted an identical manuscript to two journals. Both journals published the paper, though only one has retracted it.

Taylor and Francis journal Journal of Experimental Nanoscience retracted the 2012 paper in February this year; the notice doesn’t explain the delay, or how the editors learned about the overlap.

The retraction indicates the editor of the journal that published the other version of the paper was informed of the overlap, but the journal — – Journals of Materials Science: Materials in Electronics — has not issued a retraction.

Here’s the notice for “Development of nanostructured CdS sensor for H2S recognition: structural and physical characterizations”: Continue reading Concurrent submission and publication squashes nano paper

Retraction and republication for Lancet Resp Med tracheostomy paper

lancetrmA paper whose expression of concern we covered in November 2014 has been retracted and republished “because of the extent of the changes necessary,” according to the Lancet Respiratory Medicine.

This isn’t the first time we’ve seen retraction/republications at the Lancetaccompanied by thorough breakdowns of the problem.

This study was a meta-analysis of research on how the timing of tracheostomies — placing a breathing tube directly into the windpipe — affects patients’ mortality rate. The original paper found that critically ill patients who received a tracheostomy earlier fared better than those for whom the procedure was delayed for weeks after intubation, the recommended practice.

However, when the authors calculated how many patients died, they assumed that any patient who wasn’t discharged from the intensive care unit (ICU) had died there, instead of looking for other explanations. This made their estimates unreliable.

The publisher convened a panel, which ultimately decided retraction and republication was the most appropriate course of action.

The original expression of concern contained a quote from the authors about the “data discrepancy” that would later sink the paper: Continue reading Retraction and republication for Lancet Resp Med tracheostomy paper

Journal retracts part of molecular bio paper due to “unsubstantiated conclusions”

j mol evAll but one of the authors of a 2013 Journal of Molecular Evolution paper have requested a partial retraction due to “erroneous data” and “scientific misconduct” on the part of the remaining author.

The note blames second author Michael Kolesnikov for falsifying data on the formation of ATP. According to the notice, the misconduct was confirmed by a “thorough investigation” by the Bach Institute of Biochemistry in Russia, which no longer employs Kolesnikov.

Here is the note for “Abiotic Photophosphorylation Model Based on Abiogenic Flavin and Pteridine Pigments”: Continue reading Journal retracts part of molecular bio paper due to “unsubstantiated conclusions”

Cancer Cell issues big correction over “incorrectly cropped” figures, other issues

cancer cell A 2014 Cancer Cell paper became the subject of an erratum in January 2015, shortly after PubPeer members began criticizing the data. However, many issues brought up by commenters weren’t addressed in the correction notice, including a figure that might be two experiments spliced together to look like one.

The paper, led by Guido Franzoso at Imperial College London, claims that a new cancer drug called DTP3 kills myeloma cells “without causing any toxic side effects,” according to a press release from the school. Guido Franzoso is the founder of Kesios Therapeutics, a drug company which is set to begin clinical trials on DTP3.

The correction indicates that Western blots were cropped badly, which omitted several panels discussed in the text, while an “extra time point” was included accidentally. An antibody was also omitted from the description of the procedure.

PubPeer commenters have noticed additional issues, such as a criticism of figure 3D, which were not included or changed in this correction.

Here’s the correction for “Cancer-Selective Targeting of the NF-κB Survival Pathway with GADD45β/MKK7 Inhibitors”: Continue reading Cancer Cell issues big correction over “incorrectly cropped” figures, other issues