Category: freely available

Here are the 10 — yes, 10 — reasons PLOS ONE retracted this paper

Screen Shot 2016-01-19 at 10.50.25 AMPLOS One is retracting a paper for overlapping with a Wikipedia page. And for containing material lifted from other sources. And for “language errors.” And for insufficient evidence that authors found the pathogens floating around in hospital air that they claimed to find.

The instances of plagiarism are a “huge problem,” each “enough for retraction on its own,” Jonathan Eisen, a microbiologist at the University of California, Davis, told us. Eisen, who posted several comments to the paper after its publication in October, added that the paper was “simply not technically sound.”

The paper — which even contains a spelling error in its title, “Metagenomic Human Repiratory Air in a Hospital Environment” — describes a gene sequencing method to screen the air in hospitals for pathogens. The retraction note lists 10 concerns with the paper: Continue reading Here are the 10 — yes, 10 — reasons PLOS ONE retracted this paper

Paper on pine tree genetics chopped for duplication

naslovna_vol6_no2A paper on genetic variability in Austrian pine trees apparently didn’t vary enough from other work.

The journal is now retracting the 2012 paper for having significant overlap with another paper published in 2008. Another researcher pointed out the duplication — which was unintentional, according to the note, the result of

an apparent failure in communication between the co-authors on both papers which caused the papers to be overlapped.

The overlapping papers share a first author, Aleksandar Lucic, who works at the Institute of Forestry in Serbia. The other author on both papers is Vasilije Isajev, at the Faculty of Forestry in Belgrade.

“Analysis of Genetic Variability of Austrian Pine (Pinus nigra Arnold) in Serbia Using Protein Markers” was published in South-East European Forestry. The journal is not indexed on Thomson Scientific’s Web of Knowledge.

Here’s the retraction note:

Continue reading Paper on pine tree genetics chopped for duplication

Three expressions of concern added to cancer researcher’s notice list

3.coverQuestions about data and conclusions in papers by a cancer researcher at the University of Maryland have led to three expressions of concern in the Journal of Biological Chemistry.

The notices follow four retractions — two for image duplications and two for unknown reasons — for Anil K. Jaiswal. The three papers under notice are all on mechanisms that regulate gene expression; PubPeer commenters have raised questions about some of the figures in the papers.

The expression of concern on all three papers reads, in full:

Continue reading Three expressions of concern added to cancer researcher’s notice list

Satellite paper grounded for plagiarizing — from the same journal

1-s2.0-S0094576515X00129-cov150hPlagiarism happens; we see it a lot. But some cases stand out from the crowd.

For instance, we just came across an example where authors plagiarized from a paper in the same journal. Specifically, a 2015 paper on satellite orbits was found to have “extensive overlap” with another paper published in Acta Astronautica four years earlier. The last authors of the papers have connections, too — they used to work together at the Vikram Sarabhai Space Centre in India, and in 2006, they co-authored a paper together.

M. Xavier James Raj is author on the retracted paper. He was a PhD student under R.K. Sharma, author of the paper he borrowed from. Sharma currently works at Karunya University in India.

Here’s the retraction note for “Analytical orbit predictions for low and high eccentricity orbits using uniformly regular KS canonical elements in an oblate atmosphere:”

Continue reading Satellite paper grounded for plagiarizing — from the same journal

Robot for stroke patients paper copied 3 pages of equations

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A 2014 paper on a robotic system for patients who have had a stroke contains three pages of equations that are not original.

According to the retraction note, “Cascade controller design and stability analysis in FES-aided upper arm stroke rehabilitation robotic system” copied the equations from a paper that other researchers presented at a conference in 2012. The papers both describe a system that delivers a boost of electricity to stroke patients’ arms to help them perform a task.

Here’s the note, from Nonlinear Dynamics:

Continue reading Robot for stroke patients paper copied 3 pages of equations

Communications researcher regrets “severe shortcomings” in three publications

3A communications researcher in Switzerland has made a few errors in his efforts to communicate his research.

Peter J. Schulz, who works at the University of Lugano, has lost a paper which did not “appropriately acknowledge” another paper as its primary source. He has also corrected a paper with “severe shortcomings in the references.” Both papers were published in the journal Argumentation. 

In addition, he is facing allegations that a book chapter contains some unattributed material.

Schultz acknowledged the problems in a statement he emailed to us:

I regret very much the severe shortcomings in the three publications.

Here’s the retraction note for “Comments on ‘Strategic Manoeuvring with the Intention of the Legislator in the Justification of Judicial Decisions’”: Continue reading Communications researcher regrets “severe shortcomings” in three publications

List of retractions, corrections grows for Duke researchers

cov200hDuke researcher Michael Foster and his former co-author Erin Potts-Kant are adding to their notice count with a major correction from late last year to a paper on how certain cells in mice respond to a pneumonia infection, citing “potential discrepancies in the data.”

The correction is actually a partial retraction: The note explains that parts of three figures should be discounted.

We’ve also recently unearthed multiple corrections and two retractions from the pair that we missed from earlier in 2015.

After questions about the data in the corrected paper arose, the authors were able to replicate most of the experiments in the paper, according to the note. But since the paper was published, the senior author passed away, closing her lab, so they couldn’t repeat all of the work.

Here’s the correction notice for “Mast cell TNF receptors regulate responses to Mycoplasma pneumoniae in surfactant protein A (SP-A)−/− mice,” published in The Journal of Allergy and Clinical Immunology:

Continue reading List of retractions, corrections grows for Duke researchers

Oops! Authors accidentally include extra patients in biopsy paper

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A paper that compared two gauges of needles to take samples of pancreatic masses has been retracted after authors unintentionally included patients from another trial.

“Randomized Trial Comparing the Flexible 19G and 25G Needles for Endoscopic Ultrasound-Guided Fine Needle Aspiration of Solid Pancreatic Mass Lesions,” published a year ago in Pancreas, notes that:

A total of 100 patients with solid pancreatic mass lesions constituted the study cohort and were randomized equally to the 2 needle groups.

The problem? According to the retraction note, some of those patients weren’t supposed to be included:

Continue reading Oops! Authors accidentally include extra patients in biopsy paper

Paper on plant immunity can’t fight off manipulation

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A paper on how plants respond to bacteria has an invader of its own — data manipulation.

The “irregularities and inappropriate data manipulation” were found in a figure produced by the first author, Ching-Wei Chen, whose LinkedIn page lists him as a student at the National Taiwan University. The authors were unable to replicate the results in the figure, according to the note.

The authors are doing more experiments to verify the main conclusion of the 2014 paper, “The Arabidopsis Malectin-Like Leucine-Rich Repeat Receptor-Like Kinase IOS1 Associates with the Pattern Recognition Receptors FLS2 and EFR and Is Critical for Priming of Pattern-Triggered Immunity,” published in The Plant Cell.

The retraction note explains the what happened in more detail:

Continue reading Paper on plant immunity can’t fight off manipulation

“Totally crappy:” Library magazine adds quotes from vendor without authors’ consent

Screen Shot 2016-01-13 at 12.43.15 PMTwo librarians who wrote a feature story for the magazine American Libraries say that editors added quotes from an educational company without their consent.

The feature, “Special Report: Digital Humanities in Libraries,” was included in the Jan/Feb 2016 issue of the magazine, published by the American Libraries Association. It includes some data from a survey conducted by the ALA and Gale — a company that sells digital resources, such as a collection of British newspapers beginning in the 1600s. According to the survey, an “overwhelming 97% of libraries agree” that digital resources like those archives should be available in library collections.

The authors aren’t objecting to that statistic. What they are objecting to, they say, is the journal’s decision to include some general quotes from a Gale representative, without checking with them first. The authors — Stewart Varner, a Digital Scholarship Librarian at the University of North Carolina, and Patricia Hswe, who co-heads the department of Publishing and Curation Services at Penn State  —  say they first learned of the quotes when they got the magazine in the mail.

On his blog, Varner calls it a “totally crappy” situation, and explains “the article was edited after we thought we had turned in the final version:” Continue reading “Totally crappy:” Library magazine adds quotes from vendor without authors’ consent