Nature yanks controversial genetics paper whose co-author was found dead in lab in 2012

naturecover1113Nature has retracted a controversial 2012 paper by a group from Johns Hopkins University which has been the subject of a protracted public dispute.

The article, “Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK,” came from the lab of Jef Boeke,  a celebrated biochemist. But a former lab member, Daniel Yuan, who was fired by Hopkins in late 2011 after 10 years at the institution, had repeatedly raised questions about the validity of the findings. Those concerns eventually made their way into the Washington Post, prompting this response from the university. Continue reading Nature yanks controversial genetics paper whose co-author was found dead in lab in 2012

Two detailed retraction notices correct the cardiology record

jaccTwo American College of Cardiology conference abstracts published earlier this year in the Journal of the American College of Cardiology (JACC) have been retracted, one because the authors were actually measuring something other than what they reported, and the other because newer software invalidated the results.

Here’s the notice for “Worsening of Pre-Existing Valvulopathy With A New Obesity Drug Lorcaserin, A Selective 5-Hydroxytryptamine 2C Receptor Agonist: A Meta-Analysis of Randomized Controlled Trials” by Hemang B. Panchal, Parthav Patel, Brijal Patel, Rakeshkumar Patel, and Henry Philip of East Tennessee State University: Continue reading Two detailed retraction notices correct the cardiology record

Chopping broccoli: Researchers lose paper on florets after readers raise questions

b&mclWith apologies to Dana Carvey, Bioorganic & Medicinal Chemistry Letters has chopped a 2012 paper on the molecular constituents of broccoli florets after readers evidently were forced to do the job of reviewers and point out fatal flaws in the study.

The article, “Two novel bioactive glucosinolates from Broccoli (Brassica oleracea L. var. italica) florets,” came from a group in South Korea and has yet to be cited, according to Thomson Scientific’s Web of Knowledge. But according to the retraction notice, after publication critics pointed out serious problems with the work. To wit: Continue reading Chopping broccoli: Researchers lose paper on florets after readers raise questions

Plant journal retracts paper for plagiarism — of another study in the same journal

s horticulturaeScientia Horticulturae, a plant journal published by Elsevier, has retracted a paper after realizing it was a graft of another that appeared in its pages.

Here’s the notice for “Water stress effects on Cumin (Cuminum cyminum L.) yield and oil essential components,” by Farshid Vazin, Islamic Azad University, Gonabad, Iran: Continue reading Plant journal retracts paper for plagiarism — of another study in the same journal

Data artifact claims two fruit fly papers from leading UK group — who offer model response

jcbcoverA team of researchers led by Daniel St. Johnston, director of the Gurdon Institute at Cambridge and a prominent developmental biologist in the UK, has lost a pair of articles after finding that their data were unreliable. But rather than “correct” the record with subsequent papers, they’ve withdrawn the problematic work.

To our mind, this is a poster case of doing the right thing by science. We think the notices — as provided by the authors and reported by the journals — pretty much say it all, so we’ll let them speak for themselves, followed by some details St. Johnston shared with us.

The first article, “LKB1 and AMPK maintain epithelial cell polarity under energetic stress,” appeared in 2007 in the Journal of Cell Biology and has been cited 108 times, according to Thomson Scientific’s Web of Knowledge.

According to the retraction notice:

Continue reading Data artifact claims two fruit fly papers from leading UK group — who offer model response

Sensing a pattern? Pattern Recognition Letters misses rampant plagiarism in modeling paper

prlcoverIt really isn’t fair to pick on Pattern Recognition Letters, but, well, if the shoe fits…

We had fun at the expense of the journal the last time we found that a duplicate publication had escaped the editors. This time, plagiarism is to blame.

A group of authors from the Institute of Automation at the Chinese Academy of Sciences published, then promptly lost, their September 2013 article in PRL titled “Model-based 3D tracking of an articulated hand from single depth images.”

The abstract: Continue reading Sensing a pattern? Pattern Recognition Letters misses rampant plagiarism in modeling paper

Nursing journal pulls Novo Nordisk growth hormone paper over data provenance

j peds nursingThe Journal of Pediatric Nursing has retracted a 2013 article (meeting abstract, really) on growth hormone after the drug company that employed the authors cried “take it back.”

The research appears to have been presented at a meeting of the Pediatric Endocrinology Nursing Society, and looked at inefficiency in the use of devices for administering growth hormone.  All but one of the authors is listed as working for Novo Nordisk, an international pharmaceutical firm.

Here’s the notice: Continue reading Nursing journal pulls Novo Nordisk growth hormone paper over data provenance

Plagiarism leads to retraction of conduction paper

physica bPhysica B: Condensed Matter has retracted a 2013 paper by a group from Morocco and France for, well, inappropriate condensation of printed matter.

The article, “Granular and intergranular conduction in La1.32Sr1.68Mn2O7 layered manganite system,” came mostly from a team of physicists at  University Ibn Zohr, and appeared in June.

According to the retraction notice: Continue reading Plagiarism leads to retraction of conduction paper

Second retraction for chemist from Portugal who forged names, data

chemengjrnChemical Engineering Journal has retracted a 2011 article from a group of researchers in Portugal after determining that the scientists made up their data.

The clincher: According to the journal, the researchers did not possess the proper lab equipment to perform the study as reported.

The article, “Detoxification of high-strength liquid pollutants in an ozone bubble column reactor: Gas–liquid flow patterns, interphase mass transfer and chemical depuration,” appeared in August 2011 and was written by Rodrigo J. G. Lopes and Rosa M. Quinta-Ferreira, from the Group on Environmental, Reaction and Separation Engineering in the Department of Chemical Engineering at the University of Coimbra. The paper has been cited twice, according to Thomson Scientific’s Web of Knowledge, both times by the original authors.

Here’s what the abstract has to say about the work: Continue reading Second retraction for chemist from Portugal who forged names, data

Chemist loses two papers, one each for plagiarism and duplication

chem phys lettersA researcher at Shanxi Normal University in China has notched two retractions, once for plagiarism and one for duplication.

Here’s the most recent notice, which appeared in Chemical Physics Letters on September 25: Continue reading Chemist loses two papers, one each for plagiarism and duplication