Category: ecology

Ecology journal flags carnivore paper under investigation

journal-of-applied-ecologyAn ecology journal has issued an expression of concern (EOC) for a recently published study, citing an institutional investigation about the data and conclusions.

According to the notice — issued by the Journal of Applied Ecology — the author’s institution in South Africa has received a report from an independent examiner. The editors are reviewing the paper — about reducing the impact of lethal carnivores such as black-backed jackals — “in light of this information.”

An official from the journal told us the investigation has to do with “relevant background information” that was not included in the study, published online in December.

Here’s the EOC, published earlier this month: Continue reading Ecology journal flags carnivore paper under investigation

Inquiry finds no evidence of misconduct in high-profile Science paper flagged by allegations

scienceAn expert group at Uppsala University has recommended not proceeding with a full investigation into allegations of misconduct in a high-profile Science paper showing how human pollution may be harming fish.

The June paper — which caught the media’s attention for suggesting fish larvae are eating small particles of plastic rather than their natural prey — became the focus of scrutiny soon after it was published when a group of researchers raised allegations of misconduct. Earlier this year, Science told us it was considering issuing an Expression of Concern (EOC) for the paper, and Uppsala said it was conducting an inquiry, the first step in determining whether to launch a formal investigation.

The expert group who conducted the preliminary investigation has ultimately recommended against an investigation of the paper, according to an Uppsala spokesperson: Continue reading Inquiry finds no evidence of misconduct in high-profile Science paper flagged by allegations

War over whistleblower protection for Kansas ecology prof wages on

nsfA contentious case over whether a fired ecologist deserves whistleblower protection is playing out in Kansas, and the National Science Foundation (NSF) has once again weighed in.

For the second time, the NSF has told the researcher, Joseph Craine, that he does not qualify for protection as a whistleblower after he was fired from Kansas State University (KSU) for sharing misconduct allegations with a journal editor.

Craine initially asked the NSF for whistleblower protection status in 2014, arguing that he had been retaliated against for making misconduct allegations to the journal Ecology. The NSF denied Craine’s claim, but Craine appealed to federal court, which found the NSF’s reasoning opaque and remanded the case back to the agency. On June 24, the NSF’s General Counsel Lawrence Rudolph issued a new 11-page letter that lays out the basis for its decision: Continue reading War over whistleblower protection for Kansas ecology prof wages on

Biologist critiques own paper, journal retracts it — against her wishes

Evolution Cover ImageThe journal Evolution has retracted a 2007 paper about the roles of the different sexes in searching for mates, after the same author critiqued the work in a later paper. 

The case raises important questions about when retractions are appropriate, and whether they can have a chilling effect on scientific discourse. Although Hanna Kokko of the University of Zurich, Switzerland — who co-authored both papers — agreed that the academic literature needed to be corrected, she didn’t want to retract the earlier paper; the journal imposed that course of action, said Kokko. 

Let’s take a look at the retraction note: Continue reading Biologist critiques own paper, journal retracts it — against her wishes

Sample tampering leads to plant scientist’s 7th retraction

Jorge Vivanco
Jorge Vivanco

Plant scientist Jorge Vivanco has earned his seventh retraction, after an investigation found data from soil samples were “intentionally fabricated by a third party.”

Vivanco and his former postdoc Harsh Bais made a name for themselves by discovering the secret behind a nasty invasive plant: It secretes a harmful form of catechin, which kills everything around it, suggesting it could serve as a new herbicide. The findings earned the researchers a story in the New York Times.

In the newly retracted paper, published in 2005, first author Laura Perry — then a postdoc at Colorado State University — further explored the role of the plant-killer, working with Vivanco as the last author. However, when a team working in the building next door had trouble finding catechin in their samples, Perry took another look, and concluded that her samples had been tampered with.

In other words, Perry told us:   Continue reading Sample tampering leads to plant scientist’s 7th retraction

How does gender influence publishing? A window into one journal

fec_29_10 100Male and female reviewers may rate papers the same way, regardless of whether the authors are male or female — but women are more likely to get the chance to review papers (and get their own papers reviewed) if other women are involved, according to studies of the review process at Functional Ecology.

In their comprehensive study of manuscripts put through the peer review process at the journal from January 2004 through June 2014, the authors found that the average review scores of manuscripts was roughly the same regardless of whether the reviewer — or editor — was male or female.

The authors also scanned papers submitted to the journal between 2010 and 2014 to look at the impact of gender among authors, and also found papers with female authors receive equivalent scores to papers by men: Continue reading How does gender influence publishing? A window into one journal

BMC retracts paper by scientist who banned use of his software by immigrant-friendly countries

Screen Shot 2015-11-10 at 12.24.42 PMA BioMed Central journal has pulled the paper of a scientist who decided to prohibit countries that are friendly to immigrants from using his software.

Recently, German scientist Gangolf Jobb declared that starting on October 1st scientists working in countries that are, in his opinion, too welcoming to immigrants — including Great Britain, France and Germany — could no longer use his Treefinder software, which creates trees showing potential evolutionary relationships between species. He’d already banned its use by U.S. scientists in February, citing the country’s “imperialism.” Last week, BMC Evolutionary Biology pulled the paper describing the software, noting it now “breaches the journal’s editorial policy on software availability.”

Many scientists have used Jobb’s software: The BMC paper that describes it, “TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics,” has been cited 745 times since it was published in 2004, according to Thomson Scientific’s Web of Knowledge.

Jobb told Retraction Watch that the software is still available to any scientist willing to travel to non-banned countries, and that he does not care about the retraction: Continue reading BMC retracts paper by scientist who banned use of his software by immigrant-friendly countries

Kansas ecology prof loses whistleblower protection after alleging misconduct

ecologyThe U.S. government has denied whistleblower protection for a researcher who was fired from Kansas State University after alleging his colleagues misrepresented data in an ecology paper.

Researcher Joseph Craine was asked to leave K-State after being the “subject of a dismissal campaign” by colleagues when he told the Ecology journal that he believed some had been “fraudulently characterizing field studies,” according to the Topeka Capital-Journal.

In response, Craine sought whistleblower protection status from the National Science Foundation — a sponsor of the research — which was recently denied, says the Topeka Capital-Journal:

Continue reading Kansas ecology prof loses whistleblower protection after alleging misconduct

NSF investigation of high-profile plant retractions ends in two debarments

Jorge Vivanco
Jorge Vivanco

A nearly ten-year-long series of investigations into a pair of plant physiologists who received millions in funding from the U.S. National Science Foundation has resulted in debarments of less than two years for each of the researchers.

The NSF Office of Inspector General recently posted its close-out report on its decision and a review of the University’s investigation, which had recommended a total of eight retractions or corrections. Although the investigator’s names have been redacted, the text of retractions and corrections quoted in the report corresponds to papers by Continue reading NSF investigation of high-profile plant retractions ends in two debarments

Sea squirt draft paper published by mistake

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A paper on the evolution and development of urochordata — also known as sea squirts — was published in an under-developed form: Due to the publishers’ “error,” a “preliminary draft” of the article was published online in Developmental Dynamics last year.

The draft has been retracted; we can no longer find it on the site at all. The final copy of the paper has been posted in its place.

Here’s the retraction note in full for “Development, Metamorphosis, Morphology and Diversity: Evolution of Chordates muscles and the Origin of Vertebrates”:

Continue reading Sea squirt draft paper published by mistake