Category: freely available

Caught Our Notice: Doesn’t anyone do a literature review any more?

Via Wikimedia

Titles: (1) Whole-Genome De Novo Sequencing of the Lignin-Degrading Wood Rot Fungus Phanerochaete chrysosporium (ATCC 20696)

(2) Structure revision of aspergicin by the crystal structure of aspergicine, a co-occurring isomer produced by co-culture of two mangrove epiphytic fungi

What Caught Our Attention: Two articles by different groups of authors recently suffered from the same (fatal) flaw: A poor literature review. The article, “Whole-Genome De Novo Sequencing of the Lignin-Degrading Wood Rot Fungus Phanerochaete chrysosporium (ATCC 20696),” claimed to have sequenced a strain already sequenced in 2004 and published in a well-cited article.  According to Clarivate Analytics’ Web of Science, the 2004 article was cited 474 times before the now-retracted article was published. And that 2004 article appeared in a highly-cited journal, Nature Biotechnology. Continue reading Caught Our Notice: Doesn’t anyone do a literature review any more?

Journal retracts “hopelessly flawed” paper linking cell phone radiation to pain

Mario Romero-Ortega. Credit: UT-Dallas

A journal is retracting a paper linking radio waves from cell phone towers to pain in amputees, despite objections from the authors.

“Anthropogenic Radio-Frequency Electromagnetic Fields Elicit Neuropathic Pain in an Amputation Model,” originally published Jan. 16, 2016 in PLOS ONE, suggested that rats with injured nerves experienced pain when exposed to the type of electromagnetic radiation emitted by cell phone network towers. A press release issued by the University of Texas at Dallas (UT-Dallas) — where the corresponding author Mario Romero-Ortega and two co-first authors are based — said that this phenomenon has been reported anecdotally by people missing limbs.

But the study, especially its methodology, met with immediate criticism in the article’s comment section. PLOS ONE noted in March 2016 that the authors had contacted the journal regarding an error in some of the exposure levels reported in the study, which journal staff were “looking into.” In December 2016, the journal told the authors it was going to retract the paper. Now, more than one year later, it finally has.

Ken Foster, a professor at the University of Pennsylvania who commented in February 2016 that the paper was “hopelessly flawed,” told us: Continue reading Journal retracts “hopelessly flawed” paper linking cell phone radiation to pain

They thought they might solve the world’s energy problems. Then they realized they were wrong.

Frederick MacDonnell

Researchers are retracting a 2016 PNAS paper that described a way to create gasoline-like fuels directly from carbon dioxide in the atmosphere.

Senior author Frederick MacDonnell, a professor at the University of Texas at Arlington (UTA), told us he originally thought his team had made a preliminary breakthrough that might “solve the world’s energy problems.” Instead, he said:

It was an elaborate trap we fell into.

In a retraction notice that contains more information than we usually see, MacDonnell and his co-authors wrote: Continue reading They thought they might solve the world’s energy problems. Then they realized they were wrong.

Caught Our Notice: Unusual — journal flags paper for concerns, then updates them

Via Wikimedia

Title: Filled and peptide-modified single-walled carbon nanotubes: synthesis, characterization, and in vitro test for cancer cell targeting

What Caught Our Attention: After an expression of concern (EOC) is published in a journal, the usual procedure is to either publish a subsequent correction or retraction — or, unfortunately, leave it sit ad infinitum. But apparently, there’s another option. Continue reading Caught Our Notice: Unusual — journal flags paper for concerns, then updates them

JAMA journal calls for formal investigation into surgery group’s work

A JAMA journal has issued an expression of concern for a 2013 paper after discovering “substantial overlap” with a recently retracted paper in another journal.

In April 2017, the editors of JAMA Otolaryngology − Head & Neck Surgery received allegations that the paper included data that had been published in other journals. After investigating, the editors discovered extensive overlap between several sections of the JAMA paper and a now-retracted 2015 paper by the same group. The 2015 paper, published in the Journal of the American College of Surgeons (JACS), was pulled in July 2017, after the editors determined the statistical results were “incorrect” and “the data do not support the conclusions of the article.”

Given the overlap between the two papers, the JAMA editors contacted the University of L’Aquila, where the authors work, to request a formal investigation to evaluate the “integrity of the research.” Jay Piccirillo, the editor of JAMA Otolaryngology − Head & Neck Surgery, told us:

Continue reading JAMA journal calls for formal investigation into surgery group’s work

Paper retracted when co-author forgets he had published a figure before

A 2016 case study in Neurology exploring a “mystery case” has been retracted because four figures had already been published in a 2012 article.

The two papers have three authors in common, but according to the retraction notice, none could explain the duplicate publication. The notice states that Pierre Labauge, the corresponding author on the 2012 paper and the last author on the Neurology paper, said he “did not remember the first paper” when revising the recent one. Continue reading Paper retracted when co-author forgets he had published a figure before

One image was duplicated in eight papers. Yes, eight.

A cancer journal has retracted a 2014 paper after discovering one image had been duplicated in seven other papers. That’s right—the same image appeared in a total of eight papers.

For some of the papers, the issues went beyond the single image. According to the retraction notice, several papers contained other duplicated images, as well as “overlapping text.”  The notice, published in October 2017 in Asian Pacific Journal of Cancer Prevention (APJCP), is essentially a letter PLOS ONE wrote to several journals, informing them of the issues in the eight papers, all published between 2014 and 2016. The letter mentions that one of the papers—a 2016 analysis in Korean Journal of Physiology (KJPP)—had already been retracted earlier this year. One author of the retracted KJPP paper confessed to using a company to prepare and submit the manuscript. Continue reading One image was duplicated in eight papers. Yes, eight.

Caught Our Notice: Using this research tool? You’d better ask first

Via Wikimedia

Title: Patient Education After CABG: Are We Teaching the Wrong Information?

What Caught Our Attention: We’ve written about the controversy surrounding a commonly used tool to measure whether patients are sticking to their drug regimen, known as the Morisky Medication Adherence Scale (MMAS-8). It can cost thousands of dollars — and using it without payment/permission earns researchers a call from a collector, who has used legal threats to compel multiple teams to withdraw their papers (a phenomenon we wrote about in Science). The creator of the tool argues it’s copyrighted, and demanding fees ensures researchers use it properly, which avoids putting patients at risk. We’ve found a notice (paywalled, tsk-tsk) that reveals another group of authors used the tool without permission and, according to the notice, “incorrectly.”

Continue reading Caught Our Notice: Using this research tool? You’d better ask first

University finds falsified data in PNAS gene therapy paper, authors retract

A university investigation has found falsified data in a 2011 paper about the side effects of a virus commonly used in gene therapy.

The authors are retracting the paper, but one co-author told Retraction Watch they stand by their main conclusions. According to Roland Herzog, a professor at the University of Florida (UF) College of Medicine and a co-author of the paper, the falsified data were related to a minor part of the paper.

The paper, “Activation of the NF-κB pathway by adeno-associated virus (AAV) vectors and its implications in immune response and gene therapy,” was published in the Proceedings of the National Academy of Sciences (PNAS) in March 2011. All authors were affiliated with UF at the time; the handling editor, Kenneth Berns, is an emeritus professor at UF. The paper has been cited 50 times, according to Clarivate Analytics’ Web of Science. Continue reading University finds falsified data in PNAS gene therapy paper, authors retract

Elsevier retracting 26 papers accepted because of fake reviews

Elsevier has retracted 13 papers—and says it will retract 13 more—after discovering they were accepted because of fake reviews.

A spokesperson for Elsevier told us that the journals are in the process of retracting all 26 papers affected by the “peer-review manipulation” and “unexplained authorship irregularities.” Most share one corresponding author, a physical science researcher based in Iran. Continue reading Elsevier retracting 26 papers accepted because of fake reviews