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After losing two video game-violence papers, co-author’s weapons paper is flagged

Can seeing a weapon increase aggressive thoughts and behaviors?

A meta-analysis on the so-called “weapons effect” has been flagged with an expression of concern by a SAGE journal, after the researchers discovered errors affecting at least one of the main conclusions.

The paper found that the presence of weapons increased people’s aggressiveness, but not feelings of anger. However, the corresponding author, Arlin James Benjamin, who works at University of Arkansas–Fort Smith, told us:

we would urge considerably more caution in interpreting the impact of weapons on behavioral outcomes based on those initial re-analyses.

Last author Brad Bushman, a professor of communication and psychology at the Ohio State University (OSU), was the corresponding author on two now-retracted papers linking video games and violence. Continue reading After losing two video game-violence papers, co-author’s weapons paper is flagged

PLOS ONE retracts two papers one year after author says he okayed the move

PLOS ONE has retracted two 2014 papers from a group of researchers, after an institutional investigation confirmed image duplication. Although the authors initially asked to correct the figures in the two papers, they ultimately agreed with the decision to retract.

Mrinal K. Maiti—an associate professor at the Indian Institute of Technology at Kharagpur and corresponding author on the two now-retracted PLOS ONE papers—also corrected a 2016 paper published in PLOS ONE over figure-related errors. Maiti is the only author in common to all papers.

A spokesperson for the journal told us:
 Continue reading PLOS ONE retracts two papers one year after author says he okayed the move

A physics journal agreed to retract a paper several months ago. It’s still not retracted.

A physics journal says it has planned for several months to retract a 2006 paper by a prominent researcher with multiple retractions, after a concerned reader notified the editor about extensive duplication.

But, more than seven months after receiving the complaint, the journal Thin Solid Films has not yet taken action.

So what’s taking so long?

According to the editor, Joseph Greene, the delay occurred because “the publication team missed the request.”

Duplication allegations have followed the paper’s corresponding author Naba K. Sahoo for the past few years. Sahoo, a top physicist in India, has already had seven papers retracted for duplication—five earlier this year (1, 2), and two last year.

Although we did not hear back from the journal or the publisher, Elsevier, forwarded email correspondence provide insights about the Thin Solid Films paper. Continue reading A physics journal agreed to retract a paper several months ago. It’s still not retracted.

Journal replaces anti-vaccine paper it retracted for missing conflicts, “number of errors”

A journal retracted a paper about how conflicts of interest might be influencing research into the link between vaccines and autism because — wait for it — the authors failed to disclose conflicts of interest.

According to the retraction notice, the editors retracted the paper without the authors’ agreement, because the authors had a host of personal and professional interests in the field they didn’t declare, such as being associated with organizations involved in autism and vaccine safety. What’s more, the article also contained “a number of errors, and mistakes of various types that raise concerns about the validity of the conclusion.”

But now, Science and Engineering Ethics has published a new version of the article that draws similar conclusions to the retracted one, albeit with an updated conflict of interest statement, among other changes. From the abstract of the revised version: Continue reading Journal replaces anti-vaccine paper it retracted for missing conflicts, “number of errors”

Caught Our Notice: Oops — paper included proofreader’s query

Via Wikimedia

Title: Concise Review: Mesenchymal Stem Cells in Neurodegenerative Diseases

What Caught Our Attention: Everyone makes mistakes — but some are more amusing than others. In one recent correction, the publisher (Wiley) admitted to including a proofreader’s query in the published manuscript. But didn’t say what the query was.

We looked around, and think we found the added notes in the abstract on the PubMed entry (emphasis ours):  Continue reading Caught Our Notice: Oops — paper included proofreader’s query

Journal silently fixes emergency care paper — after misleading press coverage

Last month, a colleague of emergency medicine doctor Daniel Waxman sent him some newly reported findings that took him by surprise. Waxman knew from the title of a press release about the recent paper — “Nearly Half of U.S. Medical Care Comes From Emergency Rooms” — that something was wrong.

Immediately I said, that’s not true. It’s just crazy.

Waxman quickly realized the mistake: The data were based only on care provided in hospitals — much of which, not surprisingly, originates from emergency departments (EDs). But the title of the paper, the abstract, and other places in the text do not specify that. What’s more,  the press release about the study says the findings relate to “all medical care.” The journal has since changed the paper, including the title, to make that distinction clear, but not provided any editorial notice indicating the text had been updated. Meanwhile, the press release and news stories about the original study continue to report the “surprising” original findings.

Continue reading Journal silently fixes emergency care paper — after misleading press coverage

Lawyers call libel suit against journal and critic “lawless” but “well written”

Mark Jacobson

A $10 million defamation suit filed by a Stanford University professor against a critic and a journal may be an assault on free speech, according to one lawyer, but at least it’s “well written.”

Kenneth White, a lawyer at Southern California firm Brown White & Osborn who frequently blogs about legal issues related to free speech at Popehat, told us:

It’s not incompetently drafted, but it’s clearly vexatious and intended to silence dissent about an alleged scientist’s peer-reviewed article.

Scientists have publicly bemoaned the suit’s existence, as reported by several outlets, including Mashable and Nature. Mark Jacobson, an engineering professor at Stanford, has alleged that he was defamed in a June article published in the Proceedings of the National Academy of Sciences (PNAS), which was critical of a 2015 paper co-authored by Jacobson in the same journal. In a complaint filed Sept. 29 in the Superior Court of the District of Columbia, Jacobson accused the journal’s publisher, the National Academy of Sciences, and the paper’s first author, Christopher Clack, an executive at a renewable energy analysis firm, of libel.

White told us that there are several pitfalls that could trip up the lawsuit, including a DC law that allows defendants an early opportunity to ask the court to dismiss cases muzzling free speech and recover attorneys’ fees. But another attorney said the complaint should at least clear the lowest hurdle in the way of getting to trial. Continue reading Lawyers call libel suit against journal and critic “lawless” but “well written”

Caught Our Notice: Dear peer reviewer, please read the methods section. Sincerely, everyone

Via Wikimedia

Title: Plasma contributes to the antimicrobial activity of whole blood against Mycobacterium tuberculosis

What Caught Our Attention: A big peer review (and perhaps academic mentorship) fail.  These researchers used the wrong anticoagulant for their blood samples, leading them to believe that certain blood components were fighting microbes. The authors counted the number of colonies to show how well or poorly Tuberculin mycobacteria were growing in cultures — but blood samples need anticoagulants to prevent clots before analysis, and they used an anticoagulant that actually prevented the microbes from colonizing. The authors (and reviewers) should have known this from  Continue reading Caught Our Notice: Dear peer reviewer, please read the methods section. Sincerely, everyone

Carlo Croce, facing misconduct allegations, accuses former colleague of misconduct

Carlo Croce

Carlo Croce, a cancer researcher who has faced numerous research misconduct allegations, recently accused a former lab member of misconduct. Although an institutional probe did not support that allegation, Croce’s efforts have led to a retraction.

In November 2015, Croce and another cancer researcher at Ohio State University (OSU), Ramiro Garzon, contacted PLOS ONE, alleging that the paper’s corresponding author, Stefan Costinean, published data without their knowledge or permission and without “accurately acknowledging their contributions to the research.” Although the PLOS ONE paper mentioned Croce’s and Garzon’s contributions in the acknowledgements section, the two were not included as co-authors. We have obtained a copy of the report describing OSU’s preliminary probe; it did not find evidence of misconduct, but recommended the paper be retracted for using data without permission. Although Costinean disagreed, the journal has since retracted the paper.

Croce has been on the other side of this process: Seven of his papers have been retracted for issues including manipulation and duplication. After a New York Times article, published in March, explored misconduct allegations against Croce, OSU said the university is “instituting an independent external review.” Croce is currently suing the New York Times, alleging that the newspaper defamed him in the story.

Continue reading Carlo Croce, facing misconduct allegations, accuses former colleague of misconduct

Caught Our Notice: A nearly unreadable paper criticizing 2017 Nobel pick

Via Wikimedia

Title: Nobel Prize Physiology 2017 (for their discoveries of molecular mechanisms controlling the circadian rhythm) is On Fiction as There Is No Molecular Mechanisms of Biological Clock Controlling the Circadian Rhythm. Circadian Rhythm Is Triggered and Controlled By Divine Mechanism (CCP – Time Mindness (TM) Real Biological Clock) in Life Sciences 

What Caught Our Attention: This isn’t a retraction — rather, it’s a puzzling paper that we couldn’t help flagging for readers. From the title, to the affiliation (Das Nursing Home, India University Of God), to the reference list with only 11 entries — eight of which are written by the author himself — this is a paper that got our notice.

Continue reading Caught Our Notice: A nearly unreadable paper criticizing 2017 Nobel pick