Author: Cat Ferguson

Drug paper gets a fix, notching several corrections

rsc_tb_1_3_COVER.inddThe Journal of Materials Chemistry B has issued a laundry list of corrections for a 2014 chemotherapy paper, which address re-use of “some text”, incorrectly stated doses, and miscalculations of the drug concentration, among other issues.

The paper described a new way to deliver gemcitabine via nanoparticles, focusing the drug on the tumors.

It turns out the authors’ focus wasn’t so clear when writing the paper. The researchers, at the Chinese Academy of Medical Science, Peking Union Medical College, and Tianjin University in China, said they used “some text” from two 2013 papers by a team of French oncologists “without appropriate attribution,” as well as repeatedly getting the in vivo dose wrong. The manuscript also contained several incorrect calculations of the “drug loading,” or the proportion of active drug.

Here’s the correction for “Tailor-made gemcitabine prodrug nanoparticles from well-defined drug–polymer amphiphiles prepared by controlled living radical polymerization for cancer chemotherapy” (free, but requires sign-in): Continue reading Drug paper gets a fix, notching several corrections

Nothing gold can stay: gold nanoparticle paper retracted for figure theft

matresexpA paper on gold nanoparticles has been retracted after the publisher learned one of the figures had a “high degree of similarity” to a figure published by other authors a few months prior.

According to the notice, it was two authors of the retracted paper themselves who pointed out the overlap. The first author, Pratap Sahoo, is not mentioned, although it does say all three authors agreed to retract. The corresponding author of the original paper told us he was unaware of the incident.

You can compare the figures for yourself – on the left is figure 6(a) from the retracted Materials Research Express paper, rotated 90 degrees. On the right is figure 4(e) from “Porous Au Nanoparticles with Tunable Plasmon Resonances and Intense Field Enhancements for Single-Particle SERS,” published in the Journal of Physical Chemistry Letters: Continue reading Nothing gold can stay: gold nanoparticle paper retracted for figure theft

“Not faithful” figures kill apoptosis paper

iaicoverA paper on apoptosis in mice has been retracted by Infection and Immunity after a reader tipped them off that several figures were “not faithful representations of the original data.”

When the journal, published by the American Society for Microbiology (ASM), contacted the authors at Anhui Medical University in Hefei, China, they claimed they couldn’t provide the experimental data thanks to “damage to a personal computer,” said Ferric Fang, editor of the journal and a member of the board of directors of the Center for Scientific Integrity, Retraction Watch’s parent organization. Seven figures in total were compromised, including several that were duplicated throughout the article.

Here’s the notice for “Reactive Oxygen Species-Triggered Trophoblast Apoptosis Is Initiated by Endoplasmic Reticulum Stress via Activation of Caspase-12, CHOP, and the JNK Pathway in Toxoplasma gondii Infection in Mice”: Continue reading “Not faithful” figures kill apoptosis paper

Cabbage batch skids: new experiments dry up plant paper

current biologyProminent plant researcher Mark Estelle has retracted a paper on plant hormones after follow-up studies showed the conclusions were incorrect.

The hormone in question, auxin, is a major player in plant growth and development. The retracted Current Biology paper reported that a certain auxin receptor, designated AFB4, downregulates the responses of cabbage-cousin Arabidopsis thaliana to the signaling molecule. But after publication, the researchers experimented with a mutant seedling that didn’t produce the receptor, and discovered it didn’t overreact to auxin signals, indicating the receptor wasn’t playing a major role in limiting the effects.

Estelle, a Howard Hughes Medical Institute investigator based at the University of California, San Diego, told us he and his team are working on a paper that will contain the accurate data from the paper, along with new findings.

Here’s the notice for “The AFB4 Auxin Receptor Is a Negative Regulator of Auxin Signaling in Seedlings”, which has 62 citations, per Google Scholar: Continue reading Cabbage batch skids: new experiments dry up plant paper

BioMed Central retracting 43 papers for fake peer review

bmc logoBioMed Central is retracting 43 papers, following their investigation into 50 papers that raised suspicions of fake peer review, possibly involving third-party companies selling the service.

In November 2014 we wrote about fake peer reviews for Nature; at that point there had been about 110 retractions across several journals. The addition of 16 retractions by Elsevier for the same reason, and today’s 43 from BMC, brings retractions resulting from the phenomenon up to about 170.

BMC has also contacted institutions regarding 60 additional papers that were rejected for publication, but seem to be part of the same kind of scam. Regarding the third-party agents, BMC senior editor of scientific integrity Elizabeth Moylan writes: Continue reading BioMed Central retracting 43 papers for fake peer review

Authors retract PNAS Epstein-Barr virus paper for “anomalous and duplicated” figures

pnas 2515PNAS has retracted a paper on the cancer-causing Epstein-Barr virus just two months after publication, in a notice that fingers a now-former graduate student for manipulating figures.

The paper tries to explain how Epstein-Barr virus blocks the immune system’s attempts to destroy it. According to the notice, the three “nonexperimentalist authors” – identified in the paper as two P.I.’s from University of Texas at Austin and one from the University of California, San Francisco – didn’t know the figures “were not reflective of original Northern blot and immunoblot data.”

That leaves UT Austin PhD student Jennifer Cox under the bus. Her LinkedIn says she pursued a PhD from 2010-2015, though it’s unclear if she’s received a degree. Cox’s name is at the top of P.I. Christopher Sullivan’s list of past lab members, and she’s the only one on the page whose name doesn’t hyperlink to additional information, such as a contact.

The school issued a press release about the study that quoted Cox, which has been removed from the UT site but is still available on Science Daily: Continue reading Authors retract PNAS Epstein-Barr virus paper for “anomalous and duplicated” figures

University finds Dutch economist guilty of misconduct; he responds

Peter Nijkamp

The Free University of Amsterdam found Peter Nijkamp, one of the nation’s leading economists who has lost several papers for self-plagiarism, has been found guilty of “questionable research practices,” according to the newly released results of an investigation.

Nijkamp has published a strongly worded criticism of the report (at least according to Google Translate, since his writing is in Dutch).

According to independent student publication Ad Valvas, the commission, led by Jaap Zwemmer, a professor emeritus at the University of Amsterdam, found Nijkamp was guilty of “questionable research practices.” University rector Frank van der Duyn Schouten, on the other hand, said in an official statement that there was “insufficient basis” to claim questionable research practices for each article.

Continue reading University finds Dutch economist guilty of misconduct; he responds

Two more retractions appear for prominent MIT cancer researcher Robert Weinberg

genes and developmentTwo identical retraction notices have popped up for MIT professor Robert Weinberg, a highly-cited cancer researcher who had a retraction and a correction in 2013, both in Cancer Cell. 

These two new retractions, in Genes and Development, stem directly from another paper by Weinberg and colleagues in Cell that will apparently be retracted, as the “same analytical methodology was used,” according to the notices [see bottom of the post for an update].

Weinberg is highly regarded, and at least 20 of his papers have been cited over a thousand times.

First author Scott Valastyan was a promising postdoc at the time of the paper’s publication. He was a 2011 Runyon Fellow at Harvard, a three-year, $156,000 award for outstanding cancer postdocs. He doesn’t seem to have published anything since 2012, though he is listed as a joint inventor with Weinberg on patents filed in 2009 and 2014.

Here are the notices for “Concomitant suppression of three target genes can explain the impact of a microRNA on metastasis” (cited 73 times, according to Thomson Scientific’s Web of Knowledge) and “Activation of miR-31 function in already-established metastases elicits metastatic regression” (cited 54 times), both paywalled: Continue reading Two more retractions appear for prominent MIT cancer researcher Robert Weinberg

Sticky situation: Paper using honey for healing pulled over data issues

honey
Image via Hillary Stein

A paper on dressing wounds with honey has been retracted after the journal realized that an outlier patient was throwing off the data analysis.

Honey has been used for millennia as an antimicrobial wound dressing. Doctors can even buy sterile preparations of the sweetener. But the evidence that honey is better than other wound dressings is still inconclusive.

According to the retracted paper, published in International Wound Journal in 2008, Manuka honey has an acidic pH which helps reduce the alkaline environment of chronic woulds. Indeed, the authors found that Manuka honey dressings lowered wound pH and reduced wound size.

Sadly, the paper was pulled in 2014, after someone realized one patient had a particularly large wound that was throwing off statistics. The injury was 61 cm^2 at the beginning of the study, while the others ranged from .9 to 22 cm^2. After removing that patient from the analysis, the results no longer held up.

Continue reading Sticky situation: Paper using honey for healing pulled over data issues

Warning: plagiarism may be hazardous to your safety paper

12 Process Safety and Environmental Protection (once)A paper on making emergency evacuations more efficient at facilities that handle hazardous materials has been retracted for plagiarism.

According to the Process Safety and Environmental Protection retraction notice, the 2013 paper, by a group at Tsinghua University in Beijing, plagiarized part of a 2007 article by Greek researchers called “Modeling emergency evacuation for major hazard industrial sites.” (The 2007 article has been cited 46 times, according to Google Scholar.)

Here’s the notice for “Emergency Response Plans Optimization for Unexpected Environmental Pollution Incidents using an Open Space Emergency Evacuation Model” (paywalled): Continue reading Warning: plagiarism may be hazardous to your safety paper