PLOS ONE has faced a decline in submissions – why? New editor speaks

By some measures, 2016 was a somewhat rocky year for PLOS ONE — it issued some high-profile retractions, and published fewer papers, in part due to a decline in submissions. Still, the first multidisciplinary open-access journal — which accepts all submissions that meet technical and ethical standards, regardless of the results — publishes more than 20,000 papers per year, juggling thousands of editors and reviewers. So what does the future hold for this “large and complex” journal? We spoke with its new editor, Joerg Heber, who assumed the role in November.

Retraction Watch: What are your primary goals for the journal, and how do you plan to achieve them?

Continue reading PLOS ONE has faced a decline in submissions – why? New editor speaks

Editors retract paper about anesthesia procedure after investigation uncovers data issues

The editors of an anesthesiology journal have retracted a paper about predicting how patients will respond to a procedure, after the results of an investigation cast doubt on the validity and originality of the work.

According to the retraction notice, the editors became concerned about the validity of the data and conducted an investigation, which found irregularities, “including misrepresentation of results.” Because the authors could not provide adequate evidence to assuage these concerns, the editors decided to retract the paper.

The paper — about which facial muscles best predict if a patient is ready to be intubated — had already been flagged on F1000: A few years ago, two anesthesiologists from Florida commented that they found the article “confusing,” and felt that the authors “did not prove their hypothesis.”

Here’s the retraction notice for “Comparison of four facial muscles, orbicularis oculi, corrugator supercilii, masseter or mylohyoid, as best predictor of good conditions for intubation: A randomised blinded trial,” published in the European Journal of Anaesthesiology in 2013 and cited once: Continue reading Editors retract paper about anesthesia procedure after investigation uncovers data issues

Negligence by stressed-out postdoc led to retraction of high-profile paper, supervisor says

The timing was tight, but Sergio Gonzalez had done it. Gonzalez, a postdoctoral researcher at the Institute for Neurosciences of Montpellier (INSERM) in France, had a paper accepted in a top journal by the end of 2015, just in time to apply for a small number of highly sought-after permanent research positions that open up in France each year.

If Gonzalez had missed the January deadline for this system of advancement, known as concours, he would have had to wait until the following cycle to apply.

Once his paper was accepted by the Journal of Clinical Investigation, Gonzalez could breathe a sigh of relief. He began being invited to interviews. But then, a comment showed up at PubPeer.

Continue reading Negligence by stressed-out postdoc led to retraction of high-profile paper, supervisor says

Headline-grabbing Science paper questioned by critics

When zoologists at the University of Oxford published findings in Science last year suggesting ducklings can learn to identify shapes and colors without training (unlike other animals), the news media was entranced.

However, critics of the study have published a pair of papers questioning the findings, saying the data likely stem from chance alone. Still, the critics told us they don’t believe the findings should be retracted.

If a duckling is shown an image, can it pick out another from a set that has the same shape or color?  Antone Martinho III and Alex Kacelnik say yes. In one experiment, 32 out of 47 ducklings preferred pairs of shapes they were originally shown. In the second experiment, 45 out of 66 ducklings preferred the original color. The findings caught the attention of many media outlets, including the New York Times, The Atlantic, and BuzzFeed.

Martinho told us:

Continue reading Headline-grabbing Science paper questioned by critics

Huh? Cancer paper gets retracted because of its correction

Here’s a rather odd case: When readers raised issues about some of the images in a 2008 cancer paper, the authors issued a correction last year. But when readers asked additional questions about the corrected images, the authors decided to retract the paper entirely, along with its correction.

Both the original and corrected versions were questioned on PubPeer.

Here’s the retraction notice for the 2008 article “PRIMA-1MET induces mitochondrial apoptosis through activation of caspase-2,” published in Oncogene, which includes a link to the July 2016 correction: Continue reading Huh? Cancer paper gets retracted because of its correction

Weekend reads: A publisher sends the wrong message on data sharing; jail for scientific fraud; pigs fly

The week at Retraction Watch featured three new ways companies are trying to scam authors, and a look at why one journal is publishing a running tally of their retractions. Here’s what was happening elsewhere: Continue reading Weekend reads: A publisher sends the wrong message on data sharing; jail for scientific fraud; pigs fly

15-year old paper pulled for image problems

A group of researchers in France has been forced to retract their 2002 article in the Journal of Virology after learning that the paper was marred by multiple image problems.

The paper, “P0 of Beet Western Yellows Virus Is a Suppressor of Posttranscriptional Gene Silencing,” came from the lab of Veronique Ziegler-Graff, a plant biologist at the University Louis Pasteur, in Strasbourg. The authors attribute some of the image problems to “genuine mounting mistakes,” and have repeated the experiments to confirm the conclusion, as have other labs. However, the researchers couldn’t find all the original data from the 2002 paper.

Although the retraction statement points the finger at the first author, Sebastien Pfeffer, the list of contributors includes Patrice Dunoyer, a frequent collaborator of Olivier Voinnet, a high-profile plant biologist whose work has come under intense scrutiny.

According to the lengthy notice:
Continue reading 15-year old paper pulled for image problems

“Knowledgeable informant” outs researchers for falsifying data

A pathology journal has retracted a 2015 paper from researchers in China after concluding the authors had falsified and copied some of the data and text.

According to the notice, a “knowledgeable informant” told the journal about the overlap and “fraudulent” aspects of the paper, which the editors were able to confirm. The journal retracted the paper last month.

Here’s the retraction notice for “Genistein attenuates glucocorticoid-induced bone deleterious effects through regulation Eph/ephrin expression in aged mice:”

Continue reading “Knowledgeable informant” outs researchers for falsifying data

Journal flags another paper by diabetes researcher who sued to stop retractions

It would seem that resorting to legal means to avoid editorial notices doesn’t always work.

We’re coming to that conclusion after seeing yet another notice for Mario Saad, based at the University of Campinas in São Paulo, Brazil. In this case, it’s an expression of concern from the Journal of Endocrinology, on a 2005 paper that lists Saad as the second-to-last author. According to the notice, the journal is concerned the paper contains spliced and duplicated images; although the authors offered to repeat the experiments, the journal considered that potential delay “unacceptable.”

Despite Saad’s legal efforts, he is now up to 11 retractions, along with multiple expressions of concern.

Here’s the full text of the notice (which is paywalled, tsk tsk):

Continue reading Journal flags another paper by diabetes researcher who sued to stop retractions

Should software companies choose not to work with predatory publishers?

Jake Beal

With so many journals out there, it can be hard to know which ones are legitimate, and which ones have adopted so-called “predatory” practices – publishing anything as long as authors can pay. In this guest post, computer scientist Jacob Beal at BBN Technologies highlights one way he believes software companies may indirectly endorse questionable publishers by working with them– and why they should stop.

If you are a researcher, there’s a pretty good chance that you know Editorial Manager, the manuscript-handling system used by a vast number of journals, including Nature and the PLoS family of journals. In a publishing environment made increasingly murky by so-called “predatory” and other low-quality publishers, it used to be the case that seeing Editorial Manager was a clear signal that a journal was at least legitimate, whatever other pluses or minuses it might have.

Unfortunately, that appears to no longer be the case. Continue reading Should software companies choose not to work with predatory publishers?