Category: ecology

Updated: Science fish-microplastics paper retracted

Despite continuing to vigorously defend their work, the authors of a controversial paper about the effects of human pollution asked Science to retract the paper last week.

According to a release from Uppsala University issued today, authors Peter Eklöv and Oona Lönnstedt submitted their request to Science last week, noting they wanted to withdraw the paper “as long as a suspicion of misconduct remains.”

The release — which echoes a statement that was also provided to Nature — notes:

Continue reading Updated: Science fish-microplastics paper retracted

An editor in chief was caught manipulating citations. Now he’s been asked to resign.

Artemi Cerdà

An earth science journal has asked an editor to resign after it was revealed he had been manipulating citations at multiple journals.

Artemi Cerdà had already agreed to step down temporarily from Land Degradation & Development after the publisher, Wiley, was alerted that Cerdà had resigned from other journals for citation manipulation. In a new statement, the journal announces that Cerdà’s resignation has become permanent.

Here’s the entire statement:

Continue reading An editor in chief was caught manipulating citations. Now he’s been asked to resign.

Editor steps down from journal while it investigates citation irregularities

Artemi Cerdà

The editor of the journal Land Degradation & Development has stepped down amidst an investigation into citation problems at the journal.

The editor, Artemi Cerdà of the University of Valencia in Spain, has also disappeared from the list of editors at two journals published by the European Geosciences Union, which recently announced that one of its editors had engaged in citation manipulation.

Here’s a statement we just received from a spokesperson for Wiley, which publishes Land Degradation & Development:

Continue reading Editor steps down from journal while it investigates citation irregularities

Error-laden database kills paper on extinction patterns

An ecologist in Australia realized a database he was using to spot trends in extinction patterns was problematic, affecting two papers. One journal issued an expression of concern, which has since turned into a retraction. So far, the other journal has left the paper untouched.

The now-retracted paper concluded that medium-sized species on islands tend to go extinct more often than large or small mammalian species. But a little over a year ago, Biology Letters flagged the paper with an expression of concern (EOC), noting “concerns regarding the validity of some of the data and methods used in the analysis.”

Now, last author Marcel Cardillo at Australian National University has come to a new conclusion about extinction patterns. A retraction notice that has replaced the EOC explains:

Continue reading Error-laden database kills paper on extinction patterns

“A sinking feeling in my gut:” Diary of a retraction

Daniel Bolnick is photographed at HHMI’s Janelia Farms campus on Wednesday, Oct. 9, 2013 in Ashburn, Va. (Kevin Wolf/AP Images for HHMI)

When an ecologist realized he’d made a fatal error in a 2009 paper, he did the right thing: He immediately contacted the journal (Evolutionary Ecology Research) to ask for a retraction. But he didn’t stop there: He wrote a detailed blog post outlining how he learned — in October 2016, after a colleague couldn’t recreate his data — he had misused a statistical tool (using R programing), which ended up negating his findings entirely. We spoke to Daniel Bolnick at the University of Texas at Austin (and an early career scientist at the Howard Hughes Medical Institute) about what went wrong with his paper “Diet similarity declines with morphological distance between conspecific individuals,” and why he chose to be so forthright about it.

Retraction Watch: You raise a good point in your explanation of what went wrong with the statistical analysis: Eyeballing the data, they didn’t look significant. But when you plugged in the numbers (it turns out, incorrectly), they were significant – albeit weakly. So you reported the result. Did this teach you the importance of trusting your gut, and the so-called “eye-test” when looking at data? Continue reading “A sinking feeling in my gut:” Diary of a retraction

Stolen data prompts Science to flag debated study of fish and plastics

scienceIn August, Science told us it was considering adding an Expression of Concern to a high-profile paper about how human pollution is harming fish — and yesterday, the journal did it.

The move comes after a group of researchers alleged the paper contains missing data, and the authors followed a problematic methodology. In September, however, the co-authors’ institution, Uppsala University in Sweden, concluded there wasn’t enough evidence to launch a misconduct investigation.

The notice from Science stems from the theft of a computer carrying some of the paper’s raw data, making it impossible to reproduce some of its findings: Continue reading Stolen data prompts Science to flag debated study of fish and plastics

Tomato study didn’t get co-author okays, includes unreliable data

scientia-horticulturaeA journal has retracted a paper examining the traits of drought-resistant tomatoes after an investigation at the first author’s institution in Italy found a number of problems.

For starters, the first author — Maria Riccardi of the National Research Council of Italy-Institute for Agricultural and Forest Systems in the Mediterranean (CNR-ISAFOM) in Ercolano, Naples, Italy — apparently submitted the paper without consulting the study’s four other listed co-authors. What’s more, according to the retraction notice in Scientia Horticulturae, the paper’s description of the experiment “does not reflect the real conditions under which the data was collected,” rendering the findings invalid.  

Riccardo d’Andria, CNR-ISAFOM’s former director who conducted an investigation into the case, said Continue reading Tomato study didn’t get co-author okays, includes unreliable data

Should journals reject papers solely on ethical grounds?

biological-conservation

Recently, an ecology journal received a submission that made them pause. In order to conduct their research, the authors had to kill thousands of fish. The study had been approved by conservation authorities, but it still wasn’t sitting well with the journal.

So it rejected the paper, on ethical grounds.

Biological Conservation explained its decision in a recent paper, noting the killing of thousands of vertebrates (marine and freshwater fish) in a protected area was “unnecessary and inappropriate,” and adds the journal will continue questioning and rejecting papers that “do not meet reasonable standards of practice.”

This is not a universal practice, however — years ago, The New England Journal of Medicine (NEJM) published the results of a research project that resulted in 90 people becoming infected with HIV. Again, that study had obtained the necessary ethical approvals — but should the journal act as the final judge?

According to the editors of Biological Conservation, yes. In “Field work ethics in biological research,” they write: Continue reading Should journals reject papers solely on ethical grounds?

Two journals, same name: Did one editor retract the other’s paper?

amphibian-and-reptile-conservationTwo journals sharing the same title — allegedly due to an “academic divorce” between the founders — are giving two different accounts to why a paper may (or may not) have been retracted.

Confused yet? We are.

Here’s what we can piece together. The journal Amphibian and Reptile Conservation once had two editors, Craig Hassapakis and Robert Browne; both names appear on the same cover of a 2011-2012 issue of the journal, as librarian Jeffrey Beall noted in a blog post published last year. But since then, there seems to have been an “academic split” between the two (as defined by Beall), and each now publishes a different version of the publication named Amphibian and Reptile Conservation.

Recently, we came across a 2013 paper co-authored by Browne marked “Retracted” on the version of the site founded by Craig Hassapakis. Browne’s version of the journal can be found here. 

Meanwhile, the study’s first author, Omar Fadhil Al-Sheikhly from the University of Baghdad in Iraq, claims the paper was never retracted in the first place: Continue reading Two journals, same name: Did one editor retract the other’s paper?

Should journals abolish word limits for papers?

Source: Jonathan Joseph Bondhus
Source: Jonathan Joseph Bondhus

We’re asking ourselves that question after reading a recent paper which shows that — in the ecology literature, at least — longer papers gather more citations.

In “Citations increase with manuscript length, author number, and references cited in ecology journals,” Charles Fox at the University of Kentucky and his colleagues found exactly what the title specifies — ecology papers published between 2009 and 2012 received more citations if they were longer, included more authors, and/or had a longer list of references.

It wasn’t a big difference, the authors note in Ecology and Evolution: Continue reading Should journals abolish word limits for papers?