Category: by publisher

Journal silently fixes emergency care paper — after misleading press coverage

Last month, a colleague of emergency medicine doctor Daniel Waxman sent him some newly reported findings that took him by surprise. Waxman knew from the title of a press release about the recent paper — “Nearly Half of U.S. Medical Care Comes From Emergency Rooms” — that something was wrong.

Immediately I said, that’s not true. It’s just crazy.

Waxman quickly realized the mistake: The data were based only on care provided in hospitals — much of which, not surprisingly, originates from emergency departments (EDs). But the title of the paper, the abstract, and other places in the text do not specify that. What’s more,  the press release about the study says the findings relate to “all medical care.” The journal has since changed the paper, including the title, to make that distinction clear, but not provided any editorial notice indicating the text had been updated. Meanwhile, the press release and news stories about the original study continue to report the “surprising” original findings.

Continue reading Journal silently fixes emergency care paper — after misleading press coverage

Lawyers call libel suit against journal and critic “lawless” but “well written”

Mark Jacobson

A $10 million defamation suit filed by a Stanford University professor against a critic and a journal may be an assault on free speech, according to one lawyer, but at least it’s “well written.”

Kenneth White, a lawyer at Southern California firm Brown White & Osborn who frequently blogs about legal issues related to free speech at Popehat, told us:

It’s not incompetently drafted, but it’s clearly vexatious and intended to silence dissent about an alleged scientist’s peer-reviewed article.

Scientists have publicly bemoaned the suit’s existence, as reported by several outlets, including Mashable and Nature. Mark Jacobson, an engineering professor at Stanford, has alleged that he was defamed in a June article published in the Proceedings of the National Academy of Sciences (PNAS), which was critical of a 2015 paper co-authored by Jacobson in the same journal. In a complaint filed Sept. 29 in the Superior Court of the District of Columbia, Jacobson accused the journal’s publisher, the National Academy of Sciences, and the paper’s first author, Christopher Clack, an executive at a renewable energy analysis firm, of libel.

White told us that there are several pitfalls that could trip up the lawsuit, including a DC law that allows defendants an early opportunity to ask the court to dismiss cases muzzling free speech and recover attorneys’ fees. But another attorney said the complaint should at least clear the lowest hurdle in the way of getting to trial. Continue reading Lawyers call libel suit against journal and critic “lawless” but “well written”

Caught Our Notice: Dear peer reviewer, please read the methods section. Sincerely, everyone

Via Wikimedia

Title: Plasma contributes to the antimicrobial activity of whole blood against Mycobacterium tuberculosis

What Caught Our Attention: A big peer review (and perhaps academic mentorship) fail.  These researchers used the wrong anticoagulant for their blood samples, leading them to believe that certain blood components were fighting microbes. The authors counted the number of colonies to show how well or poorly Tuberculin mycobacteria were growing in cultures — but blood samples need anticoagulants to prevent clots before analysis, and they used an anticoagulant that actually prevented the microbes from colonizing. The authors (and reviewers) should have known this from  Continue reading Caught Our Notice: Dear peer reviewer, please read the methods section. Sincerely, everyone

A journal retracted a paper when authors couldn’t pay. Then it retracted the retraction.

Oops.

A plant journal recently retracted a 2017 paper, saying the authors couldn’t pay the page charges ($110/page). The notice has since disappeared, and the journal announced on Twitter Thursday it was issued in error. The paper is now intact on the journal’s site.

This isn’t the first time the journal has withdrawn a statement that authors couldn’t pay the page charges — we’ve discovered the journal removed a line to that effect from a 2015 retraction notice (although in that case, it left the retraction intact). Page charges, often required by traditional publishers, typically cover printing costs; they differ from article processing charges (APCs) levied by open-access journals, which cover the cost of publishing the paper and making it freely available.

We’ve contacted editors at the journal and its publisher, Taylor & Francis, to try to find out why there are mixed messages about author page charges. A spokesperson for the publisher said it was unable to respond before deadline, but it was looking into the matter:

I can confirm that we are committed to following [Committee on Publication Ethics] guidelines and that we are taking this issue seriously.

In the meantime, here’s what we know.

Continue reading A journal retracted a paper when authors couldn’t pay. Then it retracted the retraction.

Journal to assemble “senior editorial committee” to review paper that led to board resignations

Following heavy criticism of its decision to correct — instead of retract — a paper accused of plagiarism, Scientific Reports is adding an editor’s note to the paper and forming a committee to review the case.

The 2016 paper in question has been accused of plagiarism by a researcher at Johns Hopkins, Michael Beer. Following the initial allegation, the journal decided to correct, not retract, the paper. After we covered the story, nearly two dozen Hopkins researchers threatened to resign if the journal didn’t retract the paper. This week, the journal reaffirmed its initial decision, and the resignations are pouring in.

Yesterday, Suzanne Farley, Executive Editor of Scientific Reports, a Nature Publishing Group journal, sent us a statement:

Continue reading Journal to assemble “senior editorial committee” to review paper that led to board resignations

17 Johns Hopkins researchers resign in protest from ed board at Nature journal

More than a dozen members of the editorial board at Scientific Reports have resigned after the journal decided not to retract a 2016 paper that a researcher claims plagiarized his work.

As of this morning, 19 people — mostly researchers based at Johns Hopkins — had stepped down from the board, according to Hopkins researcher Steven Salzberg. Salzberg organized the response after learning of the issue from colleague Michael Beer, who has accused the 2016 paper of plagiarism.

Monday morning, Richard White, the editor of the journal (published by Springer Nature), sent an email to Salzberg and the researchers who had threatened to resign if the paper wasn’t retracted, saying:

Continue reading 17 Johns Hopkins researchers resign in protest from ed board at Nature journal

Researchers ask to retract cancer paper five days after it’s flagged by journal

Researchers from the University of Kansas asked to retract their paper only days after the journal issued an expression of concern related to some of the images.

The retraction notice marks the close of an episode that started in June, but it doesn’t provide much closure: Figures in the paper apparently do not match primary data, but there’s no hint as to how that happened.

In a statement sent to JCS — just five days after the expression of concern came out — last author Kristi Neufeld, a cancer biologist at KU, wrote: Continue reading Researchers ask to retract cancer paper five days after it’s flagged by journal

Senior NOAA appointee calls for retraction of paper on illegal fishing

Chris Oliver

A top US official at the National Oceanic and Atmospheric Administration, who was recently appointed by President Donald Trump, has called for the retraction of a paper that suggests the country exports a significant amount of illegal, unreported, and unregulated fishing.

The paper, published July 6 in Marine Policy, estimated that in 2015 approximately one-fifth of Alaska pollock exports to Japan were either illegal, unreported, or unregulated — a value of as much as $75 million.

In an Oct. 11 letter (first reported by IntraFish), Chris Oliver, NOAA assistant administrator for fisheries, criticized the paper’s methodology for calculating the illegal hauls.

Oliver wrote to the journal’s editor-in-chief to say that the National Marine Fisheries Service: Continue reading Senior NOAA appointee calls for retraction of paper on illegal fishing

Caught Our Notice: Ethics, data concerns prompt another retraction for convicted researchers

Via Wikimedia

Title: Unravelling the influence of mild traumatic brain injury (MTBI) on cognitive-linguistic processing: A comparative group analysis

What Caught our Attention: RW readers might already be familiar with Caroline Barwood and Bruce Murdoch, two researchers from Australia who had the rare distinction of being criminally charged for research misconduct. Both Barwood and Murdoch received suspended sentences after being found guilty of multiple counts of fraud. In September 2014, University of Queensland announced that: Continue reading Caught Our Notice: Ethics, data concerns prompt another retraction for convicted researchers

A paper about eye damage in astronauts got pulled for “security concerns.” Huh?

Here’s a head-scratcher: A 2017 paper examining why long space flights can cause eye damage has been taken down, with a brief note saying NASA, which sponsored the research, asked for the retraction because of “security concerns.”

According to the first author, the paper included information that could identify some of the astronauts that took part in the study — namely, their flight information. Although the author said he removed the identifying information after the paper was online, NASA still opted to retract it. But a spokesperson at NASA told us the agency did not supply the language for the retraction notice. The journal editor confirmed the paper was retracted for “research subject confidentiality issues,” but referred a question about who supplied the language of the notice back to NASA.

Now lawyers are involved.

So we still have some questions about this one. Here’s what we do know.

Continue reading A paper about eye damage in astronauts got pulled for “security concerns.” Huh?