Category: plos one

Doing the right thing: Researchers retract quorum sensing paper after public process

Pamela Ronald, via UC Davis
Pamela Ronald, via UC Davis

We’ll say it again: We like being able to point out when researchers stand up and do the right thing, even at personal cost.

In December 2011, Pamela C. Ronald, of the University of California, Davis, and colleagues published a paper in PLOS ONE,”Small Protein-Mediated Quorum Sensing in a Gram-Negative Bacterium.” Such quorum sensing research is a “hot topic” right now, so not surprisingly the paper caught the attention of other scientists, and the media, including the Western Farm Press. The study has been cited eight times, according to Thomson Scientific’s Web of Knowledge.

One of those scientists who took notice was Ronald’s UC Davis colleague Jonathan Eisen, who posted about the paper on his blog. That was on January 9, 2012. But if you go to that post today, you’ll see that Eisen struck through most of it, and added this comment: Continue reading Doing the right thing: Researchers retract quorum sensing paper after public process

“Why Has the Number of Scientific Retractions Increased?” New study tries to answer

plos oneThe title of this post is the title of a new study in PLOS ONE by three researchers whose names Retraction Watch readers may find familiar: Grant Steen, Arturo Casadevall, and Ferric Fang. Together and separately, they’ve examined retraction trends in a number of papers we’ve covered.

Their new paper tries to answer a question we’re almost always asked as a follow-up to data showing the number of retractions grew ten-fold over the first decade in the 21st century. As the authors write: Continue reading “Why Has the Number of Scientific Retractions Increased?” New study tries to answer

A mega-correction for Rui Curi, whose lawyers threatened to sue Science-Fraud.org

plos oneA Brazilian researcher whose legal threats helped lead to the shutdown of Science-Fraud.org and who has had two papers retracted has had to correct another paper.

The fourth correction for Rui Curi — and we’d call it a mega-correction — is of a paper in PLOS ONE. Curi is the fourth out of 11 authors; someone named Tania Pithon-Curi is the final author:
Continue reading A mega-correction for Rui Curi, whose lawyers threatened to sue Science-Fraud.org

Quorum sensing paper retracted when new study suggests compounds weren’t what they seemed

plos oneThe authors of a paper on quorum sensing — in simple terms, how bacteria “talk” to one another — have retracted it after another group’s findings led them to discover that the mixture they used weren’t what they thought.

The refreshingly detailed retraction notice in PLOS ONE explains: Continue reading Quorum sensing paper retracted when new study suggests compounds weren’t what they seemed

Tenth retraction appears for Jesús Lemus, this one in PLOS ONE

plos oneJust two days ago, we covered the ninth retraction for Jesús Lemus, “the veterinary researcher whose work colleagues have had trouble verifying, including being unable to confirm the identity of one of his co-authors.” And already another of his retractions has appeared in one of our daily alerts.

This one appears in PLOS ONE, for “Infectious Offspring: How Birds Acquire and Transmit an Avian Polyomavirus in the Wild:” Continue reading Tenth retraction appears for Jesús Lemus, this one in PLOS ONE

Cossu-UCL follow-up: PLOS ONE paper to be corrected

Cossu
Cossu

We have a follow-up from last week’s story about a University College London (UCL) investigation into the work of Giulio Cossu that found errors but no “deliberate intention to mislead.”UCL said it will not make the full report available: Continue reading Cossu-UCL follow-up: PLOS ONE paper to be corrected

Orangutan-Ebola link in PLOS ONE paper under scrutiny

plosonePLOS ONE has issued a fascinating expression of concern about data collection in a paper it published late last year on the possible spread of deadly viruses among Indonesian orangutans. The case has been brought to the attention of the Indonesian government, but more on that in a moment.

The article, published last July by an international group of primate scientists led by Chairul Nidom, a virologist at Indonesia’s Airlangga University, sounded an alarm about “wild” orangutans in Borneo: Blood tests of 353 “healthy” animals showed antibodies for viruses akin to Ebola. What’s more, the filoviruses viruses to which the antibodies responded, as New Scientist and other outlets reported when the original paper came out, included strains not previously seen outside Africa (as well as Marburg, another deadly infection).

The article immediately prompted two comments. The first, by a poster called orangutanborneo, raised questions about the scale and logistics of the project: Continue reading Orangutan-Ebola link in PLOS ONE paper under scrutiny

“Unreliable” findings fell TB gene study in PLOS ONE

plosoneHere’s a nice example of how science should work.

A team of Swiss microbiologists has retracted their 2012 paper in PLoS One on the genetics of the TB mycobacterium after learning that the fusion protein they thought they’d used in their study was in fact a different molecule.

Here’s the retraction notice for the article, “A β-lactamase based reporter system for ESX dependent protein translocation in mycobacteria,” which has been cited once, according to Thomson Scientific’s Web of Knowledge: Continue reading “Unreliable” findings fell TB gene study in PLOS ONE

Study finds many authors aren’t sharing data when they publish — and leads to a PLOS ONE retraction

clinical chemistryA new study in Clinical Chemistry paints an alarming picture of how often scientists deposit data that they’re supposed to — but perhaps not surprisingly, papers whose authors did submit such data scored higher on a quality scale than those whose authors didn’t deposit their data.

Ken Witwer, a pathobiologist at Hopkins, was concerned that a lot of studies involving microarray-based microRNA (miRNA) weren’t complying with Minimum Information About a Microarray Experiment (MIAME) standards supposedly required by journals. So he looked at 127 such papers published between July 2011 and April 2012 in journals including PLOS ONE, the Journal of Biological Chemistry, Blood, and Clinical Chemistry, assigning each one a quality score and checking whether the authors had followed guidelines.

What he uncovered wasn’t pretty — and has already led to a retraction. From the abstract: Continue reading Study finds many authors aren’t sharing data when they publish — and leads to a PLOS ONE retraction

A pair of expressions of concern in PLOS ONE over vet science papers

PLoS ONE has issued two Expressions of Concern on unrelated studies, each of which offers plenty to be concerned about — and not just about the research itself.

One is a casualty of our old friend,  Jesús Lemus, the Spanish veterinary scientist accused of fabricating his data.

The article, titled “The PHA-Skin Test Reflects Acquired T-Cell Mediated Immunocompetence in Birds,” was published in September 2008 and cited 61 times, according to Google Scholar.

Back in April, the publisher posted this comment to the paper: Continue reading A pair of expressions of concern in PLOS ONE over vet science papers