Cell update: Co-corresponding author let go from Belgian university; retraction notice language changed

cell november 2013We’ve learned more about the circumstances behind a Cell retraction that we covered last week.

First, one of the two corresponding authors left the institution where he most recently worked. Belgium’s VIB Ghent told us that Pankaj Dhonukshe was no longer employed there and said: Continue reading Cell update: Co-corresponding author let go from Belgian university; retraction notice language changed

Authors retract Cell paper amid ongoing investigation

cell november 2013The authors of a 2012 paper in Cell have retracted it after discovering “serious issues with several figures.”

Here’s the notice for “A PLETHORA-Auxin Transcription Module Controls Cell Division Plane Rotation through MAP65 and CLASP:” Continue reading Authors retract Cell paper amid ongoing investigation

Nature yanks controversial genetics paper whose co-author was found dead in lab in 2012

naturecover1113Nature has retracted a controversial 2012 paper by a group from Johns Hopkins University which has been the subject of a protracted public dispute.

The article, “Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK,” came from the lab of Jef Boeke,  a celebrated biochemist. But a former lab member, Daniel Yuan, who was fired by Hopkins in late 2011 after 10 years at the institution, had repeatedly raised questions about the validity of the findings. Those concerns eventually made their way into the Washington Post, prompting this response from the university. Continue reading Nature yanks controversial genetics paper whose co-author was found dead in lab in 2012

Fernández genetics paper in limbo over data concerns

annrevgenAriel Fernández, the protein researcher whose theories of drug design lately have come in for questioning, has lost a paper, at least for the moment.

The article, “Supramolecular Evolution of Protein Organization,” appeared online in Annual Reviews of Genetics prior to print. It lists Fernández’s affiliation as ProWD Sciences, in Madison, Wisc. Not much exists on the web about that company, however, except an under-construction site. (ProWD, by the way, is short for PROtein-Water-Dehydron, Fernández’s area of interest.)

Here’s the notice: Continue reading Fernández genetics paper in limbo over data concerns

Aoki notches fourth retraction for image problems

jbc1013We have a fourth retraction in the Journal of Biochemistry for Naohito Aoki, a Japanese researcher and former postdoc in a German lab, whose images have been called into question but whose retraction notices were scant. In this case, however, the journal, while not exactly overbrimming with information about the article, at least gives us some sense of what’s going on.

Aoki worked in the lab of Axel Ullrich, of the Max Planck Institute of Biochemistry, and appeared on two retracted articles in the Journal of Biological Chemistry (JBC) with his mentor, along with a third with a co-author from Japan, Tsukasa Matsuda. Although those notices don’t say anything about the reason for the retractions — this was before the JBC started providing such information — Ulrich told us that Aoki had been manipulating images. Continue reading Aoki notches fourth retraction for image problems

Spat over tuberculosis study data leads to Expression of Concern

jcmA fight over who owns tuberculosis study data has led the Journal of Clinical Microbiology to publish an Expression of Concern.

Here’s the notice: Continue reading Spat over tuberculosis study data leads to Expression of Concern

Author of “way out there” paper merging physics and biology has second paper retracted

jcellsigIn February, we brought you the story of Konstantin Meyl, a

professor who claims to have developed “a self-consistent field theory which is used to derive at all known interactions of the potential vortex”

At the time, one of Meyl’s papers — which a reviewer had called “way out there” — had just been retracted, for duplication. Now a second paper — among the works from which the first retracted paper had drawn — has been retracted.

Here’s the notice from the Journal of Cell Communication and Signaling (which is buried in a footnote at the bottom of the paper): Continue reading Author of “way out there” paper merging physics and biology has second paper retracted

Author stalemate in Czech DNA paper leads to retraction

200px-Kafka_portrait
Franz Kafka

Okay, so it’s not quite Kafka, but a group of forensic geneticists from Prague’s Charles University has lost a paper in Folia Biologica (a journal from that famed institution where Kafka studied) over what appears to be a rather Byzantine dispute about authorship and the quality of the data.

The 2010 article, “DNA analysis of ancient skeletal remains” was written by a trio of authors from Charles University’s Department of Anthropology and Human Genetics. According to its abstract: Continue reading Author stalemate in Czech DNA paper leads to retraction

Duplication forces retraction of genomics paper

biosA group of biologists has lost a paper about a genomics tool after they published the findings twice.

Here’s the notice for the now-retracted paper in BIOS: Continue reading Duplication forces retraction of genomics paper

“Conflicting investigations” prompt expression of concern in BMC Genomics

Source: Wikipedia
Ariel Fernandez, source: Wikipedia

BMC Genomics has issued an expression of concern for a 2011 paper by a prominent Argentine chemist, Ariel Fernandez, whose work covers several disciplines — “His research spans representation theory in algebra, physical chemistry, molecular biophysics, and more recently, molecular evolution and drug discovery” — and institutions. And therein lies the tale.

Fernandez appeared as the first author of the article, titled “Subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances,” along with a pair of researchers from Taiwan. Fernandez’s affiliations were listed as being with the Instituto Argentino de Matemática “Alberto P. Calderón”, CONICET (National Research Council of Argentina), in Buenos Aires, the Department of Computer Science at the University of Chicago, and the Morgridge Institute for Research, in Madison, Wisc.

According to the abstract:

Continue reading “Conflicting investigations” prompt expression of concern in BMC Genomics