Category: immunology

“Unreliable” findings fell TB gene study in PLOS ONE

plosoneHere’s a nice example of how science should work.

A team of Swiss microbiologists has retracted their 2012 paper in PLoS One on the genetics of the TB mycobacterium after learning that the fusion protein they thought they’d used in their study was in fact a different molecule.

Here’s the retraction notice for the article, “A β-lactamase based reporter system for ESX dependent protein translocation in mycobacteria,” which has been cited once, according to Thomson Scientific’s Web of Knowledge: Continue reading “Unreliable” findings fell TB gene study in PLOS ONE

Study finds many authors aren’t sharing data when they publish — and leads to a PLOS ONE retraction

clinical chemistryA new study in Clinical Chemistry paints an alarming picture of how often scientists deposit data that they’re supposed to — but perhaps not surprisingly, papers whose authors did submit such data scored higher on a quality scale than those whose authors didn’t deposit their data.

Ken Witwer, a pathobiologist at Hopkins, was concerned that a lot of studies involving microarray-based microRNA (miRNA) weren’t complying with Minimum Information About a Microarray Experiment (MIAME) standards supposedly required by journals. So he looked at 127 such papers published between July 2011 and April 2012 in journals including PLOS ONE, the Journal of Biological Chemistry, Blood, and Clinical Chemistry, assigning each one a quality score and checking whether the authors had followed guidelines.

What he uncovered wasn’t pretty — and has already led to a retraction. From the abstract: Continue reading Study finds many authors aren’t sharing data when they publish — and leads to a PLOS ONE retraction

Plague paper partially retracted

iandi213coverPartial retractions — as opposed corrections or the full monty —  are unusual events in scientific publishing. But they appear to come in twos.

The journal Infection and Immunity, the work of whose editor, Ferric Fang, is much admired by this blog, has a fascinating example of the breed in its February issue.

The article in question, by a group from the University of Kentucky in Lexington led by Susan Straley, appeared online in 2007. It was titled “yadBC of Yersinia pestis, a New Virulence Determinant for Bubonic Plague,” and, as the words suggest, involved a gene marker for the virulence of plague. Or so it initially seemed.

But according to the partial retraction, the researchers are walking back one of their main claims. Consider: Continue reading Plague paper partially retracted

High school whiz kid retracts PLoS ONE herd immunity paper

Georgette speaking at the Davidson Institute’s award ceremony, Library of Congress, 2008

It’s pretty impressive to publish two peer-reviewed papers on complicated vaccination models while you’re still in high school. So it’s not surprising that Nathan Georgette, who grew up outside of Jacksonville, Florida, earned a prestigious fellowship from the Davidson Institute for Talent Development.

But perhaps even more impressive is realizing you’ve made a fundamental error in one of those studies, and retracting it while you’re still a college senior at Harvard. Continue reading High school whiz kid retracts PLoS ONE herd immunity paper

University clears leading dermatology lab head of misconduct as authors issue two corrections

Michael Hertl, a leading dermatology researcher at Philipps-University Marburg, has been cleared of any wrongdoing in a case that spawned a retraction last year and two just-published retractions.

Felicitas Riedel, a legal officer for the university, tells Retraction Watch that the

…Committee for Scientific Misconduct of the Philipps-University Marburg closed the matter and submitted its results to the President of the University who in the meantime after examination consented with it.

The findings? Continue reading University clears leading dermatology lab head of misconduct as authors issue two corrections

Allergy researchers lose second paper over “severe problems” with data

Last spring, we reported on the retraction in Clinical and Translational Allergy of a 2011 paper by researchers in Egypt and Finland after “severe problems in the data set” were uncovered. The notice cited an earlier study, from 2009, in Acta Paediatrica, that formed the basis for the subsequent trial.

At the time, the Acta Paediatrica paper still stood. No longer: Continue reading Allergy researchers lose second paper over “severe problems” with data

Japanese universities find pair of researchers guilty of misconduct in 19 papers

Kenji Okajima

We have an update in the case of two Japanese scientists who first came to our attention when they retracted a 13-year-old paper in the Journal of Neuroscience last year. Shortly after that, we learned, thanks to a report in Sankei Shimbun and a helpful Retraction Watch reader, that some 17 papers were being investigated.

It now appears that 19 papers by the two researchers, Kenji Okajima and Naoki Harada, ended up under scrutiny.

Nagoya City University said last week that their investigation had concluded that Okajima and Harada committed misconduct. The university dismissed Harada, whom they found guilty of misconduct in at least eight of the papers. The investigation couldn’t find any evidence that Okajima was directly involved, but suspended him for six months because he supervised the work. Continue reading Japanese universities find pair of researchers guilty of misconduct in 19 papers