Sampling error, flawed analysis, and miscalculation trigger Molecular Cell retraction
Guest post by Jean Hazel Mendoza
A group of researchers from France has retracted a 2013 paper from Molecular Cell after realizing that their analyses of microscopy images were flawed.
Here’s the notice for “RecA-Promoted, RecFOR-Independent Progressive Disassembly of Replisomes Stalled by Helicase Inactivation:”
This article has been retracted: please see Elsevier Policy on Article Withdrawal (http://www.elsevier.com/locate/withdrawalpolicy).
This article has been retracted at the request of the Authors. In our paper, a collaboration between the Allemand and Michel labs, single-molecule microscopy experiments were performed to describe the fate of blocked replication in an E. coli helicase mutant. The image analyses were performed by the first author of the paper. Our recent attempts to repeat these analyses have failed, and we now realize that several issues invalidate the original analyses, including sampling errors, skewed statistical analysis, and miscalculations. We therefore wish to retract this paper. We apologize to the scientific community for any loss of time and resources caused by this publication.
The study has been cited five times, according to Thomson Scientific’s Web of Knowledge. Its abstract reads:
In all organisms, replication impairment is a recognized source of genomic instability, raising an increasing interest in the fate of inactivated replication forks. We used Escherichia coli strains with a temperature-inactivated replicative helicase (DnaB) and in vivo single-molecule microscopy to quantify the detailed molecular processing of stalled replication forks. After helicase inactivation, RecA binds to blocked replication forks and is essential for the rapid release of hPol III. The entire holoenzyme is disrupted little by little, with some components lost in few minutes, while others are stable in 70% of cells for at least 1 hr. Although replisome dissociation is delayed in a recA mutant, it is not affected by RecF or RecO inactivation. RecFOR are required for full RecA filaments formation, and we propose that polymerase clearance can be catalyzed by short, RecFOR-independent RecA filaments. Our results identify a function for the universally conserved, central recombination protein RecA.
The authors report that their microscopy procedures and image analyses were based on a study they had published 2012 in Science, which itself has been cited 22 times, according to Thomson Scientific’s Web of Knowledge:
The microscopy set up is as in Lia et al. (2012) and is described in Supplemental Experimental Procedures. All image analyses were performed using the software ImageJ as described previously (Lia et al., 2012) (see also Supplemental Experimental Procedures and Figure S2). At least 80 cells (most often 150–350) were used for each determination.
When and how issues with the images arose in the Molecular Cell paper remains unclear. Lead authors Bénédicte Michel and Jean-François Allemand have yet to reply to requests for more details (first author Giuseppe Lia’s Centre de GénétiqueMoléculaire email bounced). We’ll update this post with anything we learn.