Climate paper retracted from Science over miscalculations

The authors of a paper published in Science have retracted their article following the discovery of calculation errors.

The article,“Drought sensitivity in mesic forests heightens their vulnerability to climate change” by Robert Heilmayr of the University of California, Santa Barbara and colleagues found that in drier areas, trees are less sensitive to drought and in hotter regions with a wet climate, tree growth is expected to decrease.

It has been cited once, according to Clarivate’s Web of Science. Since its publication in December, the article has been downloaded 4,641 times, posted by 154 X users, and written about by 20 news outlets and press release sites.

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Veterinary journal retracts pet food company’s paper about copper in dog food

leisergu, CC BY 2.0, via Wikimedia Commons

A veterinary journal has retracted a paper from a major pet food company after criticism prompted the authors to re-examine their data. 

The retraction is the first in the Journal of the American Veterinary Medical Association’s 180 years of publication, Lisa Fortier, the journal’s editor in chief, told Retraction Watch. But veterinary researchers who wrote to the journal with concerns about the article say the retraction doesn’t address all the issues they raised. 

The article, “Sixteen years of canine hepatic copper concentrations within normal reference ranges in dogs fed a broad range of commercial diets,” appeared online March 7. Most of the authors are affiliated with Hill’s Pet Nutrition. 

Within weeks of the article’s publication, the journal got the first of seven letters “crying foul,” Fortier said. 

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Publisher donating author fees from retracted articles to charity

What should happen to the millions of dollars publishers rake in from authors whose work is later retracted? 

Guillaume Cabanac, one of the developers of the Problematic Paper Screener, has repeatedly suggested publishers donate such revenue to charity. 

And now one is doing just that.

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‘I felt like a fraud’: A biologist goes public about a retraction

Andrew Anderson

Retractions are the stuff of nightmares for most academics. But they aren’t necessarily a career obstacle, and sometimes may be the only way forward, according to Andrew P. Anderson, a postdoctoral researcher in the biology department of Reed College, in Portland, Ore. Last month, the journal Evolution pulled and replaced a study Anderson had conducted as a PhD student under Adam G. Jones at the University of Idaho, in Moscow. The study’s findings suggested sexual selection shaped the responsiveness of the human genome to male sex hormones. Below is a lightly edited Q&A we did with Anderson about his experience.

Retraction Watch (RW): In the summer of 2022, shortly after your paper was first published, you realized it contained a significant error. What happened?

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Exclusive: How a dean went about correcting the scientific record even when at least one journal said he didn’t need to 

Russell Taichman

Less than a year after he became dean of the University of Alabama Birmingham School of Dentistry, an uncomfortable email landed in Russell Taichman’s inbox.

Overlapping and duplicated panels in one of Taichman’s 2005 papers were among a list of complaints relayed by the publisher of Cellular Signalling in the April 2020 correspondence – complaints which were publicly posted on PubPeer by Elisabeth Bik

“The substance of the complaint is image manipulation, which if true, would violate our publishing policies,” the email stated. “Please note that if we do not have an adequate and timely response, we may be forced to conclude that the allegations are truthful.”

The paper, “Diverse signaling pathways through the SDF-1/CXCR4 chemokine axis in prostate cancer cell lines leads to altered patterns of cytokine secretion and angiogenesis”, eventually became the first of five of Taichman’s papers to be retracted. We first reported on the retractions last September.  Since then, following a public records request, we’ve obtained 20 pages of redacted emails that reveal the story behind the retractions. 

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‘Sad but necessary’: Ant researchers pull fossil paper over errant claim

An army ant, via https://en.wikipedia.org/wiki/Dorylus#/media/File:Dorylus_gribodoi_casent0172627_dorsal_1.jpg

A group of insectologists is receiving praise on social media for retracting a 2022 paper in which they claimed, erroneously, it turns out, to have discovered a novel ant fossil. 

The paper, “An Eocene army ant,” appeared in November in Biology Letters, a Royal Society title. The authors were led by Christine Sosiak, of the New Jersey Institute of Technology, in Newark. The paper has yet to be cited, according to Clarivate Analytics’ Web of Science.

According to Sosiak and her colleagues:

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One small error for a physicist, one giant blunder for planetary science

For a decade, scientists have been scratching their heads when trying to put a date on primeval events like the crystallization of the magma ocean on the moon or the early formation of Earth’s continental crust. 

Their problem? A revised estimate of the half-life of a radioactive isotope called samarium-146 that is used to gauge the age of ancient rocks. 

The updated value, published in 2012 in Science, shortened samarium-146’s half-life by a whopping 35 million years, down to 68 million years from the standard estimate of 103. This reset the clock on the solar system’s early history and suggested the oldest rocks on Earth could have formed tens of millions of years earlier than previously thought.

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Contamination leads to swift retraction for Science paper on the origins of Omicron in Africa

The authors of a paper that proposed the Omicron variant of SARS-Cov-2 had evolved in Western Africa months before it was first detected in South Africa have retracted their study after discovering contamination in their samples, as several scientists had suggested on Twitter was the case. 

The article, “Gradual emergence followed by exponential spread of the SARS-CoV-2 Omicron variant in Africa,” was published in Science on December 1 by a team led by Jan Felix Drexler of Charité – Universitätsmedizin Berlin. 

Soon after publication, many geneticists expressed skepticism on social media about the study, including questioning whether the results came from contamination during the sequencing process. 

Tulio de Oliveira, director of the Centre for Epidemic Response and Innovation and the KwaZulu-Natal Research Innovation and Sequencing Platform at the University of KwaZulu-Natal in South Africa, tweeted on December 4 about “weaknesses” in the study, including that “the quality of the sequences seems problematic”: 

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‘A display of extreme academic integrity’: A grad student who found a key error praises the original author

Paul Lodder

Last week, we wrote about the story of Paul Lodder, a graduate student at the University of Amsterdam who had been trying without success to replicate the findings of a 2020 paper in Scientific Reports by Rubén Herzog, of the Universidad de Valparaíso in Chile. The paper would end up retracted. At the time, Lodder had not had a chance to respond to our questions about the case. We’re pleased to share his comments as a guest post.

I’ve had a big passion for research into the therapeutic potential of psychedelics ever since I had started my undergraduate in biomedical sciences at Amsterdam University College. I am currently a MSc Artificial Intelligence student and about a year ago, in preparation for a computational neuroscience course, I wanted to expand on the model used by Rubén.

I sent him an e-mail explaining the situation, and requesting some parameters that weren’t detailed in the paper so that I could start running the simulations myself. Rubén responded very quickly and was immediately very helpful with getting me started with running the simulations.

Now that I was able to run the model properly, I wanted to start off with being able to reproduce the paper’s analysis results before looking into expanding. Using the methodology described in the paper, I re-implemented the steps needed to compute the entropy. And indeed, this is where I got some different results as presented in the paper.

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A grad student finds a ‘typo’ in a psychedelic study’s script that leads to a retraction

Paul Lodder

Sometime after it was published, Paul Lodder, a graduate student at the University of Amsterdam, had been trying without success to replicate the findings of a 2020 paper in Scientific Reports

The original article was written by a group led by Rubén Herzog, of the Universidad de Valparaíso in Chile. Titled “A mechanistic model of the neural entropy increase elicited by psychedelic drugs,” the paper purported to help illuminate what happens in the brain under the influence of substances like LSD. 

But the findings of the study wouldn’t replicate. And unlike some researchers who might blow off criticism of their work, or blame the replicators for the failure, Herzog sent Lodder the scripts his team had used.

Lodder found the problem quickly. As Herzog related to Retraction Watch, Lodder (whose schedule has been challenging the past few weeks as we’ve played phone tag) [See update on this post.]:

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